SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene75176

Length: 280 nt

UniGene Fasta

>sp_v3.0_unigene75176
GTATCCAGCTGCCGCCCGACTTGGCAGCGGACCAAGTTTTAGTCTTGGAGAAGGTATTGAATTTGCTGTCGGCATGTGTAGATGTCATGTCCTCGAACGCATGGCTGAACGCACTGGGAGCCATGGATTTGTCGCAGATGTGTGTACAAGCGATGTGGGAGACCGACTCGCCCTTGAAGCAAATCCCANACTTCGAGACAGAGGTCATCAAGCGTTGCAAGGATGCTGGCATTGAGTCTGTATACGACCTCATGGAGATGGAAGATGATAGACGCAACGA

Ace file of the UniGene sp_v3.0_unigene75176

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA polymerase theta/eta n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8P537_COPC7	-	-	1.99993e-41	89%
FL-Next	tr=Putative uncharacterized protein; Ectocarpus siliculosus (Brown alga).	-	-	0.0	57%

Source	Gene names
Sma3	At1g20960; F9H16.5; GSVIVT00001949001; MICPUN_98172; OSTLU_44002; Os02g0107000; OsI_05501; OsJ_05035; Ot11g01350; POPTRDRAFT_773179; POPTRDRAFT_776276; RCOM_0811130; THAPS_35726; VITISV_042645;

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Sec63 domain	IPR004179	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3		IPR018127	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G20960.1	emb1507 U5 small nuclear ribonucleoprotein helicase, putative chr1:7302591-7309914 REVERSE LENGTH=2171	4.0e-20	53%
RefSeq	Arabidopsis thaliana	NP_001185050.1	putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana]	5.0e-20	53%
RefSeq	Populus trichocarpa	XP_002322252.1	predicted protein [Populus trichocarpa]	2.0e-19	53%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8LHW4

Fln msg: Distance to subject end: 152 aas, your sequence is shorter than subject: 92 - 2195

Fln protein: IQLPPDLAADQVLVLEKVLNLLSACVDVMSSNAWLNALGAMDLSQMCVQAMWETDSPLKQIPNFETEVIKRCKDAGIESVYDLMEMEDDRRN

Protein Length: 93

Fln nts: GTATCCAGCTGCCGCCCGACTTGGCAGCGGACCAAGTTTTAGTCTTGGAGAAGGTATTGAATTTGCTGTCGGCATGTGTAGATGTCATGTCCTCGAACGCATGGCTGAACGCACTGGGAGCCATGGATTTGTCGCAGATGTGTGTACAAGCGATGTGGGAGACCGACTCGCCCTTGAAGCAAATCCCAaACTTCGAGACAGAGGTCATCAAGCGTTGCAAGGATGCTGGCATTGAGTCTGTATACGACCTCATGGAGATGGAAGATGATAGACGCAACGA

Fln Alignment:

GFIJCBT03GEJL7___LPPDLAADQVLVLEKVLNLLSACVDVMSSNAWLN-ALGAMDLSQMCVQAMWETDSPLKQIPNFETEVIKRCKDAGIESVYDLMEMEDDRRN
D8LHW4_______________LSTDLRADQKVVLLDSVRLLQAVVDVISSNGWLKPALEAMELSQMMVQGVWAKDSYLRQIPHFSPEVIQRCEDAGVETPFDIMGLEDDERD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain