SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene75162

Length: 207 nt

UniGene Fasta

>sp_v3.0_unigene75162
GCAACATGGGGACAACTTTGAAAACTTTGTGTTCCAGAAAGTTGTCCCTGTAGTGGGAGACGTTGCAGCAGATCATAATCTTGGAATTGGCCAAGAGAGCACGAGAGGGCATCTTTGGGAGATTCTGGATGCTGTTGTAAATATTGCAGCAAGCACAGCGTTTGATGACAGATATGACGTTTCACTCAATGTCAACACACGTGGAGC

Ace file of the UniGene sp_v3.0_unigene75162

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Probable fatty acyl-CoA reductase 4 n=3 Tax=Arabidopsis RepID=FACR4_ARATH	-	-	8.0e-11	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%

Source	GOs	Term	Type	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Male sterility	IPR004262	-	-
Sma3	Male sterility, NAD-binding	IPR013120	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G44540.1	FAR4 fatty acid reductase 4 chr3:16124079-16127769 FORWARD LENGTH=493	3.0e-15	47%
RefSeq	Arabidopsis thaliana	NP_001030809.1	putative fatty acyl-CoA reductase 4 [Arabidopsis thaliana]	3.0e-15	47%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NSE8

Fln msg: Distance to subject end: 216 aas, atg_distance in limit (1-15): atg_distance = 12, W2: There is no M at the beginning, your sequence is shorter than subject: 68 - 296

Fln protein: QHGDNFENFVFQKVVPVVGDVAADHNLGIGQESTRGHLWEILDAVVNIAASTAFDDRYDVSLNVNTRG

Protein Length: 69

Fln nts: GCAAC_-_ATGGGGACAACTTTGAAAACTTTGTGTTCCAGAAAGTTGTCCCTGTAGTGGGAGACGTTGCAGCAGATCATAATCTTGGAATTGGCCAAGAGAGCACGAGAGGGCATCTTTGGGAGATTCTGGATGCTGTTGTAAATATTGCAGCAAGCACAGCGTTTGATGACAGATATGACGTTTCACTCAATGTCAACACACGTGGAGC

Fln Alignment:

GFIJCBT03FNGAD___QHGDNFENFVFQKVVPVVGDVAADHNLGIGQESTRGHLWEILDAVVNIAASTAFDDRYDVSLNVNTRG
A9NSE8_______________QHGDNFENFVFQKVVPVVGDVAGGHNLGIDKESTREHLWNILDAIVNNAASTMFDDRYDISLNVNTRG

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain