SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene75145

Length: 295 nt

UniGene Fasta

>sp_v3.0_unigene75145
TGTTGTAGAAAGAGCCCGTAATGTAAATGCCTGGAAAGAATTTGCAAAGGAGGCTGCTCAATGCACAACTTATTCTGATTTAGGTAGAATGTTACTAAAGCTACATAGTATGATATTGGAAAGATATATTAATCCTTGCTGGATGAAAACTTTTGATCAATGGAAGCATCAATGTGAGAATACAGGAACTGCAGAATATACAGAGAAACTTATAGAGGAGTTGGAGAATGCAATCTTGTGGGATGATGTTTCTAAGCTGTGGAGAATTCTGTGCAACCTGGTCAAAGTGAAGAGT

Ace file of the UniGene sp_v3.0_unigene75145

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Set domain protein, putative n=1 Tax=Ricinus communis RepID=B9S8S4_RICCO	-	-	1.0e-19	52%
FL-Next	sp=Histone-lysine N-methyltransferase SUVR5; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	50%

Source	Gene names
Sma3	GSVIVT00025025001; RCOM_0604230;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	histone-lysine N-methyltransferase activity	GO:0018024	Molecular Function	-
Sma3	chromatin modification	GO:0016568	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SET domain	IPR001214	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Post-SET domain	IPR003616	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Pre-SET domain	IPR007728	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G23740.2	" nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding chr2:10098213-10103229 FORWARD LENGTH=1382"	5.0e-22	50%
RefSeq	Arabidopsis thaliana	NP_001189585.1	zinc binding motif and SET domain-containing protein [Arabidopsis thaliana]	7.0e-22	50%
RefSeq	Populus trichocarpa	XP_002307230.1	predicted protein, partial [Populus trichocarpa]	4.0e-19	52%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O64827

Fln msg: Distance to subject end: 1106 aas, your sequence is shorter than subject: 98 - 1382

Fln protein: VVERARNVNAWKEFAKEAAQCTTYSDLGRMLLKLHSMILERYINPCWMKTFDQWKHQCENTGTAEYTEKLIEELENAILWDDVSKLWRILCNLVKVKS

Protein Length: 99

Fln nts: TGTTGTAGAAAGAGCCCGTAATGTAAATGCCTGGAAAGAATTTGCAAAGGAGGCTGCTCAATGCACAACTTATTCTGATTTAGGTAGAATGTTACTAAAGCTACATAGTATGATATTGGAAAGATATATTAATCCTTGCTGGATGAAAACTTTTGATCAATGGAAGCATCAATGTGAGAATACAGGAACTGCAGAATATACAGAGAAACTTATAGAGGAGTTGGAGAATGCAATCTTGTGGGATGATGTTTCTAAGCTGTGGAGAATTCTGTGCAACCTGGTCAAAGTGAAGAGT

Fln Alignment:

GFIJCBT03HCCJX___VVERARNVNAWKEFAKEAAQCTTYSDLGRMLLKLHSMILERYINPCWMK-TFDQWKHQCENTGTAEYTEKLIEELENAILWDDVSKL
O64827_______________VSEAARDIIIWKEFAMEATRSTSYHDLGIMLVKLHSMILQRYMDPIWLENSFPLWVQKCNNAVNAESIELLNEEFDNCIKWNEVKSL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain