SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene75042

Length: 361 nt

UniGene Fasta

>sp_v3.0_unigene75042
ATTCGGTTGGGAACCTAGCACGCCTCCAACAACTAAGCTTGTTTGACTGCTCCGCTCTGCAGATGCTTCCGGACTCGGTTGGCAACCTAGTAGGCCTCCAACATCTCTCCTTGACAAGGTGCTCCGCTCTGCCGGAGCTTCCGGACTCGTTTGGGAACCTAGCACGTCTCCAACATCTCAACTTGTCCCAGTGCGACTATCTACAGGCGCTTCCTGAGTCGGTTGGGAACCTAGCAGGCCTCCAACATCTGGACTTAAGCTATTGCTTCGATCTGCAAAGGCTTCCGTACTCGGTTGGGAACCTAGCACGCCTCCAACATCTCGACTTGTCCCATTGCTATTCTCTGGAGATGCTTCCGTC

Ace file of the UniGene sp_v3.0_unigene75042

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NBS/LRR (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8J2_PINTA	-	-	6.0e-32	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Sma3	NBS/LRR	-	-	6.135e-08	-

Source	Gene names
Sma3	At1g69550; At3g04220; At5g11250; F10D13_24; F2I11_140; OSJNBa0050G13.13; Os01g0260500; Os01g0937300; OsI_01261; OsI_05113; OsJ_01178; OsJ_04697; OsJ_05392; P0504E02.12-1; P0699D11.16; PHYPADRAFT_132267; PHYPADRAFT_132491; PHYPADRAFT_141262; PHYPADRAFT_143

Source	GOs	Term	Type	Identity
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G69550.1	disease resistance protein (TIR-NBS-LRR class) chr1:26148836-26153374 REVERSE LENGTH=1400	1.0e-33	54%
RefSeq	Arabidopsis thaliana	NP_564971.2	TIR-NBS-LRR class disease resistance protein [Arabidopsis thaliana]	2.0e-33	54%
RefSeq	Populus trichocarpa	XP_002334784.1	predicted protein [Populus trichocarpa]	3.0e-25	46%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQE2

Fln msg: STOP codon was not found. Distance to subject end: 15 aas, your sequence is shorter than subject: 119 - 1071

Fln protein: SVGNLARLQQLSLFDCSALQMLPDSVGNLVGLQHLSLTRCSALPELPDSFGNLARLQHLNLSQCDYLQALPESVGNLAGLQHLDLSYCFDLQRLPYSVGNLARLQHLDLSHCYSLEMLP

Protein Length: 120

Fln nts: ATTCGGTTGGGAACCTAGCACGCCTCCAACAACTAAGCTTGTTTGACTGCTCCGCTCTGCAGATGCTTCCGGACTCGGTTGGCAACCTAGTAGGCCTCCAACATCTCTCCTTGACAAGGTGCTCCGCTCTGCCGGAGCTTCCGGACTCGTTTGGGAACCTAGCACGTCTCCAACATCTCAACTTGTCCCAGTGCGACTATCTACAGGCGCTTCCTGAGTCGGTTGGGAACCTAGCAGGCCTCCAACATCTGGACTTAAGCTATTGCTTCGATCTGCAAAGGCTTCCGTACTCGGTTGGGAACCTAGCACGCCTCCAACATCTCGACTTGTCCCATTGCTATTCTCTGGAGATGCTTCCGTC

Fln Alignment:

GFIJCBT03GYV3P___SVGNLARLQQLSLFDCSALQMLPDSVGNLVGLQHLSLTRCSALPELPDSFGNLARLQHLNLSQCDYLQALPESVGNLAGLQHLDLSYCFDLQRLPYSVGNLARLQHLDLSHCYSLEMLP
C0PQE2_______________SVGNLTGLQTLDLIECSTLQTLPDSVGNLTGLQTLYLSRCSTLQTLPDSVGNLTGLQTLYLSGCSTLQTLPDSVGNLTGLQTLYLSGCSTLQTLPDSVGNLTGLQTLNLDRCSTLQTLP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain