SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene75007

Length: 370 nt

UniGene Fasta

>sp_v3.0_unigene75007
GCTTACCAAGGTTGAGGGCAGTTGTTCTTCACAGTGCTATACTTTCAGGCCTCCGTGTACTTTATCCTCTCAAAATCACTTTCTGGTTTGATATCTATAAAGTAAGTGATGGAAACAATAAGCCGATTTGTGTTAAGCATCCGATATATTTCTATTCACGTTCCTATTTGAAGATTTTTTCACACCAAACATGGCCAGCAGTGTTAAGTAGAGGTATTTGGCTCTGCAGAATATTGACAAGATCCGACATGTGAAATGTCCTGCACTGGTGATACATGGAACAGCTGATGATGTTGTTGATTGGTCCCATGGAAAAAGATTATGGGAGCTAAGCAAAGAAAAATATGAGCCTTTATGGATTAAAGGGGGT

Ace file of the UniGene sp_v3.0_unigene75007

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	alpha/beta-hydrolase domain-containing protein [Arabidopsis thaliana] gb\|ABE65859.1\| hypothetical protein At2g24320 [Arabidopsis thaliana] gb\|AEC07562.1\| alpha/beta-hydrolase domain-containing protein [Arabidopsis thaliana]	-	-	4.0e-29	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Sma3	Protein bem46, putative	-	-	2.373e-23	-

Source	Gene names
Sma3	AT4g24760; AT4g31020; At1g13610; At1g32190; At1g66900; At2g24320; At3g01690; At3g30380; At4g24760; At4g31020; At5g14390; At5g38220; F13B4.9; F18O22_180; F21F23.4; F22K18.40; F28J7.1; F3C3.3; F4P13.23; F6I18.70; GSVIVT00007993001; GSVIVT00011539001; GSVIVT

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	peptidase activity	GO:0008233	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	-
Sma3	von Willebrand factor, type C	IPR001007	-	-
Sma3	Thionin	IPR001010	-	-
Sma3	TNFR/CD27/30/40/95 cysteine-rich region	IPR001368	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Phospholipase/carboxylesterase/thioesterase	IPR003140	-	-
Sma3	Sulphate transporter	IPR011547	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G24320.1	alpha/beta-Hydrolases superfamily protein chr2:10345659-10346829 REVERSE LENGTH=286	3.0e-31	77%
RefSeq	Arabidopsis thaliana	NP_180009.2	alpha/beta-hydrolase domain-containing protein [Arabidopsis thaliana]	3.0e-31	77%
RefSeq	Populus trichocarpa	XP_002308387.1	predicted protein [Populus trichocarpa]	7.0e-31	79%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NV43

Fln msg: Separated hits, possible frame ERROR between 140 and 227, Distance to subject end: 145 aas, your sequence is shorter than subject: 123 - 384

Fln protein: LPRLRAVVLHSAILSGLRVLYPLKITFWFDIYKVSDGNNKPICVKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQNIDKIRHVKCPALVIHGTADDVVDWSHGKRLWELSKEKYEPLWIKGG

Protein Length: 124

Fln nts: GCTTACCAAGGTTGAGGGCAGTTGTTCTTCACAGTGCTATACTTTCAGGCCTCCGTGTACTTTATCCTCTCAAAATCACTTTCTGGTTTGATATCTATAAAGTAAGTGATGGAAACAATAAGCCGATTTGTGTTAAGCAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCAGAATATTGACAAGATCCGACATGTGAAATGTCCTGCACTGGTGATACATGGAACAGCTGATGATGTTGTTGATTGGTCCCATGGAAAAAGATTATGGGAGCTAAGCAAAGAAAAATATGAGCCTTTATGGATTAAAGGGGGT

Fln Alignment:

GFIJCBT03F3XEK___LPRLRAVVLHSAILSGLRVLYPLKITFWFDIYKVSDGN---NKPICVKHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQNIDKIRHVKCPALVIHGTADDVVDWSHGKRLWELSKEKYEPLWIKGG
A9NV43_______________LPSLRAVVLHSAILSGLRVMYPVKRTYWFDIYKNIDKMPLVNCPVLIIHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKNIDKMPLVNCPVLIIHGTSDEVVDCSHGKQLWDLCKEKYEPLWLKGG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain