SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene74990

Length: 246 nt

UniGene Fasta

>sp_v3.0_unigene74990
TTTATCTCTGGCGAAGTAGAATTTGACAAAGTCAACTTCAGTTATGATAAACAAAAAGAAGTCATTAATGATATTTCTCTTAAAATACCTGGTGGGCAAACTGTTGCTTTTGTTGGAGCTACTGGGGCCGGAAAGTCGACGATTCTTCGCCTGTTGGATCGTTTTTATGATGTCACTTCGGGTGCTATCCGCATTGATAGCCAGGACATCAGAGACGTTGATCTTTTTAGCCTTCGAGACCGTATT

Ace file of the UniGene sp_v3.0_unigene74990

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Heavy metal tolerance protein n=2 Tax=Metarhizium RepID=E9EEK8_METAQ	-	-	4.0e-27	73%
FL-Next	tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew).	-	-	0.0	42%

Source	Gene names
Sma3	ATM3; At5g58270; CDS1; CHLREDRAFT_133289; CHLREDRAFT_99736; Cds1; PHYPADRAFT_115784; POPTRDRAFT_571941; RCOM_0261010; STA1; ppabcb1;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of substances	GO:0042626	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	transport	GO:0006810	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	Transcription factor, MADS-box	IPR002100	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G58270.1	STA1, ATATM3, ATM3 ABC transporter of the mitochondrion 3 chr5:23562168-23567040 FORWARD LENGTH=728	1.0e-21	53%
RefSeq	Arabidopsis thaliana	NP_200635.1	ABC transporter B family member 25 [Arabidopsis thaliana]	2.0e-21	53%
RefSeq	Populus trichocarpa	XP_002319987.1	ABC transporter family of the mitochondria family [Populus trichocarpa]	3.0e-22	54%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: E6Y0T0

Fln msg: Distance to subject end: 164 aas, your sequence is shorter than subject: 82 - 1316

Fln protein: FISGEVEFDKVNFSYDKQKEVINDISLKIPGGQTVAFVGATGAGKSTILRLLDRFYDVTSGAIRIDSQDIRDVDLFSLRDRI

Protein Length: 83

Fln nts: TTTATCTCTGGCGAAGTAGAATTTGACAAAGTCAACTTCAGTTATGATAAACAAAAAGAAGTCATTAATGATATTTCTCTTAAAATACCTGGTGGGCAAACTGTTGCTTTTGTTGGAGCTACTGGGGCCGGAAAGTCGACGATTCTTCGCCTGTTGGATCGTTTTTATGATGTCACTTCGGGTGCTATCCGCATTGATAGCCAGGACATCAGAGACGTTGATCTTTTTAGCCTTCGAGACCGTATT

Fln Alignment:

GFIJCBT03F4I4A___ISGEVEFDKVNFSYDKQKEV--INDISLKIPGGQTVAFVGATGAGKSTILRLLDRFYDVTSGAIRIDSQDIRDVDLFSLRDRI
E6Y0T0_______________VKGDIEFQHVSFKYPTRPDVQIFRDLCLFVHSGKTVALVGESGSGKSTAIALLERFYDPDSGRIFLDGVEIRQLQLKWLRQQM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain