SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene74988

Length: 148 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene74988
GTGCTTCATGATCTAGAAGAGGAAGAGAAGGAATCAATGCTTTGTGGGCACAGTGAGAAGCTGGCTATTGCTTTCGGGCTTATAAATACACCCCCTGGTACAATTATCAGAATAACCAAAAACCTTCGTGCTTTGTGGAGATTGCCAC

Ace file of the UniGene sp_v3.0_unigene74988 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q7Y211.2\|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g57430, chloroplastic; Flags: Precursor gb\|AEE79654.1\| pentatricopeptide repeat-containing protein [Ara	-	-	2.0e-12	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Sma3	Pentatricopeptide repeat protein	-	-	0.0	-

Source	Gene names
Sma3	At1g20230; At1g47580; At2g22070; At3g12770; At3g23330; At3g46790; At3g57430; At4g30700; At4g33170; CRR2; DYW9; F16N3.14; F4I10.100; GSVIVT00005426001; GSVIVT00006467001; GSVIVT00010543001; GSVIVT00011403001; GSVIVT00013497001; GSVIVT00014707001; GSVIVT000

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	thiamine biosynthetic process	GO:0009228	Biological Process	-
Sma3	chloroplast RNA processing	GO:0031425	Biological Process	-
Sma3	polycistronic mRNA processing	GO:0031426	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Ribosomal protein S3, C-terminal	IPR001351	-	-
Sma3	Thiamine biosynthesis protein ThiC	IPR002817	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	K Homology domain, type 2	IPR004044	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G57430.1	OTP84 Tetratricopeptide repeat (TPR)-like superfamily protein chr3:21255731-21258403 REVERSE LENGTH=890	4.0e-17	76%
RefSeq	Arabidopsis thaliana	NP_191302.2	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	5.0e-17	76%
RefSeq	Populus trichocarpa	XP_002299387.1	predicted protein [Populus trichocarpa]	2.0e-18	79%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P0W0

Fln msg: Distance to subject end: 36 aas, your sequence is shorter than subject: 49 - 370

Fln protein: VLHDLEEEEKESMLCGHSEKLAIAFGLINTPPGTIIRITKNLRALWRLP

Protein Length: 50

Fln nts: GTGCTTCATGATCTAGAAGAGGAAGAGAAGGAATCAATGCTTTGTGGGCACAGTGAGAAGCTGGCTATTGCTTTCGGGCTTATAAATACACCCCCTGGTACAATTATCAGAATAACCAAAAACCTTCGTGCTTTGTGGAGATTGCCAC

Fln Alignment:

GFIJCBT03HIDFC___VLHDLEEEEKESMLCGHSEKLAIAFGLINTPPGTIIRITKNLR
A9P0W0_______________VLHDVEEEQKEWILGHHSEKLAIAFGIISTPPGTTIRVVKNLR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain