SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene74967

Length: 168 nt

UniGene Fasta

>sp_v3.0_unigene74967
AGATATTGTCCCATCTTCACACAACTGTGACGTCCCACATGTTACTCGCACTGATTTGTGAGTCTGCTGTCTGACAATGGAAACACCAAGGATGATCTTAGGCTTCCTTCTGATGATCAACTACTTACCCAGATCAAAGATGGCTTTGGAGAGGGGAAGGATCTTGTT

Ace file of the UniGene sp_v3.0_unigene74967

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	eukaryotic translation initiation factor 5A [Picea abies]	-	-	1.0e-18	89%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Sma3	Eukaryotic translation initiation factor 5A	-	-	3.636e-17	-

Source	Gene names
Sma3	At1g13950; At1g69410; EIF-5A1; EIF-5A2; EIF5A1; EIF5A2; EIF5A3; EIF5A4; EIF5A5; EIFSV1; F10D13.8; F16A14.17; F23O10.2; F7A19.4; GSVIVT00004748001; GSVIVT00016285001; GSVIVT00032771001; LOC_Os03g55150; LOC_Os12g32240; OJ1118_G09.115; OJ1513_F02.108; OSJNBa

Source	GOs	Term	Type	Identity
Sma3	translation initiation factor activity	GO:0003743	Molecular Function	-
Sma3	translational initiation	GO:0006413	Biological Process	-
Sma3	xylem development	GO:0010089	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Translation elongation factor IF5A	IPR001884	-	-
Sma3	KOW	IPR005824	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Translation protein SH3-like, subgroup	IPR014722	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Translation elongation factor, IF5A, hypusine site	IPR019769	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G13950.1	EIF-5A, ELF5A-1, ATELF5A-1, EIF5A eukaryotic elongation factor 5A-1 chr1:4773631-4774668 FORWARD LENGTH=158	2.0e-17	73%
RefSeq	Arabidopsis thaliana	NP_172848.1	translation initiation factor eIF-5A [Arabidopsis thaliana]	3.0e-17	73%
RefSeq	Populus trichocarpa	XP_002312268.1	predicted protein [Populus trichocarpa]	6.0e-21	86%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NNB5

Fln msg: Warning!, your query overlaps and the subject is separated, Distance to subject end: 21 aas, your sequence is shorter than subject: 56 - 159

Fln protein: DIVPSSHNCDVPHVTRTxxVSLLSDNGNTKDDLRLPSDDQLLTQIKDGFGEGKDLV

Protein Length: 57

Fln nts: AGATATTGTCCCATCTTCACACAACTGTGACGTCCCACATGTTACTCGCACTxxxxxxGTGAGTCTGCTGTCTGACAATGGAAACACCAAGGATGATCTTAGGCTTCCTTCTGATGATCAACTACTTACCCAGATCAAAGATGGCTTTGGAGAGGGGAAGGATCTTGTT

Fln Alignment:

GFIJCBT03GWC5F___DIVPSSHNCDVPHVTRTDxxxxxxxxxxFVSLLSDNGNTKDDLRLPSDDQLLTQIKDGFGEGKDLV
A9NNB5_______________DIVPSSHNCDVPHVTRTDxxxxxxxxxxFVSLLADNGNTKDDLRLPSDEQLLTQIKDGFGEGKDLV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain