SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene74794

Length: 414 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene74794
CAGAGTCCTGATGGGTACACAGTTGCATCAGCTGCAGCAGATGAAACACTCAGGTTTTGGCAAGTTTTTGGGGCTCTCGATGCCTCAAAGAAGACTAAGACTAAAGATGTTCAAGGGGCTTTCAACATGTTTCATACTCATATGAAGTTCAACTGAAGGGGGAAGTTCAACTGAAGGTAGTAATTATGTTCAACTGAAGGTAGTAATTAAATGTTCTATTTTCTGTTTACAAAGCTCTTTTCCAGGAACTCTATAGTTCTGTTGGATTTTCATGTAGTACGTTCCCGTTTTATCCGATAAGTATTTGTCCAGACTCAAGGTAGTAATTAGATGTTTTATTTTCTGCTTGCAAAGCTGTTTTGCAGGCCCTCTATAGTTCTGTACTCATAGCATGAATTGTGTATTTTATCTATT

Ace file of the UniGene sp_v3.0_unigene74794 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cell division cycle 20, cofactor of APC complex [Arabidopsis thaliana] emb\|CAB38785.1\| WD-repeat protein-like protein [Arabidopsis thaliana] emb\|CAB80044.1\| WD-repeat protein-like protein [Arabidopsis thaliana] gb\|ABG48494.1\| At4g33270 [Arabidopsis thalia	-	-	3.0e-06	61%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	68%

Source	Gene names
Sma3	PHYPADRAFT_119089;

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D8RFV8

Fln msg: your sequence is shorter than subject: 52 - 419

Fln protein: QSPDGYTVASAAADETLRFWQVFGALDASKKTKTKDVQGAFNMFHTHMKFN*

Protein Length: 53

Fln nts: CAGAGTCCTGATGGGTACACAGTTGCATCAGCTGCAGCAGATGAAACACTCAGGTTTTGGCAAGTTTTTGGGGCTCTCGATGCCTCAAAGAAGACTAAGACTAAAGATGTTCAAGGGGCTTTCAACATGTTTCATACTCATATGAAGTTCAACTGA___AGGGGGAAGTTCAACTGAAGGTAGTAATTATGTTCAACTGAAGGTAGTAATTAAATGTTCTATTTTCTGTTTACAAAGCTCTTTTCCAGGAACTCTATAGTTCTGTTGGATTTTCATGTAGTACGTTCCCGTTTTATCCGATAAGTATTTGTCCAGACTCAAGGTAGTAATTAGATGTTTTATTTTCTGCTTGCAAAGCTGTTTTGCAGGCCCTCTATAGTTCTGTACTCATAGCATGAATTGTGTATTTTATCTATT

Fln Alignment:

GFIJCBT03GRG9J___QSPDGYTVASAAADETLRFWQVFGALDASKKT--KTKDVQGAFN
D8RFV8_______________QSPDGYTVASAAGDETLRFWQVFGTPDTTKATAVRTKASSSALN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain