SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene74768

Length: 267 nt

UniGene Fasta

>sp_v3.0_unigene74768
GCGCAACACTGTAAACGTTCCGATCAATGGATGGGCGGCTATAAGATTTGTAGCCGACAACCCTGGTGTCTGGATGTTCCATTGCCATCTGGATATACACATAACATGGGGTTTGCCATGGCCTTTGTAGTTGAGAATGGACCAGATTATGGATCAAGCCTTCAGCGGCCTCCGCGAGATCTTCCACGGTGCTCAGATGTTGACCAGCAACTTATCTTACCCAAGTCGATAGCGGCACAACCAGTTAATTGCTTTATTCGAGTCACA

Ace file of the UniGene sp_v3.0_unigene74768

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Laccase n=3 Tax=Pinus RepID=F4MKL7_PINPS	-	-	2.0e-21	86%
FL-Next	tr=Laccase; Pinus taeda (Loblolly pine).	-	-	0.0	86%
Sma3	Laccase	-	-	3.048e-34	-

Source	ECs	Term	Type	e value	Identity
Sma3	Laccase.	EC:1.10.3.2	-	0.0	-
Sma3	L-ascorbate oxidase.	EC:1.10.3.3	-	1.494e-28	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Ascorbate and aldarate metabolism	00053		1.494e-28	%
Sma3	Metabolic pathways	01100		1.494e-28	%

Source	Gene names
Sma3	At2g40370; At2g46570; At5g01190; At5g03260; At5g05390; At5g48100; At5g58910; At5g60020; B1088C09.5; F13A10.10; F15A17_290; F7J8.170; GLac1; GLac3; GLac90; GSVIVT00005407001; GSVIVT00005410001; GSVIVT00006373001; GSVIVT00006374001; GSVIVT00008641001; GSVIV

Source	GOs	Term	Type	Identity
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	laccase activity	GO:0008471	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	lignin biosynthetic process	GO:0009809	Biological Process	-
Sma3	lignin catabolic process	GO:0046274	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Multicopper oxidase, type 1	IPR001117	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Multicopper oxidase, type 2	IPR011706	-	-
Sma3	Multicopper oxidase, type 3	IPR011707	-	-
Sma3	Laccase	IPR017761	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G40370.1	LAC5 laccase 5 chr2:16858192-16860593 REVERSE LENGTH=580	1.0e-20	78%
RefSeq	Arabidopsis thaliana	NP_181568.1	laccase 5 [Arabidopsis thaliana]	2.0e-20	78%
RefSeq	Populus trichocarpa	XP_002312187.1	laccase 90b, partial [Populus trichocarpa]	6.0e-21	84%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9AUI5

Fln msg: Overlapping hits, possible frame ERROR between 115 and 109, STOP codon was not found. Distance to subject end: 25 aas, your sequence is shorter than subject: 89 - 576

Fln protein: RNTVNVPINGWAAIRFVADNPGVWMFHCHLDIHITxxxxMAFVVENGPDYGSSLQRPPRDLPRCSDVDQQLILPKSIAAQPVNCFIRVT

Protein Length: 90

Fln nts: GCGCAACACTGTAAACGTTCCGATCAATGGATGGGCGGCTATAAGATTTGTAGCCGACAACCCTGGTGTCTGGATGTTCCATTGCCATCTGGATATACACATAACAxxxxxxxxxxxxATGGCCTTTGTAGTTGAGAATGGACCAGATTATGGATCAAGCCTTCAGCGGCCTCCGCGAGATCTTCCACGGTGCTCAGATGTTGACCAGCAACTTATCTTACCCAAGTCGATAGCGGCACAACCAGTTAATTGCTTTATTCGAGTCACA

Fln Alignment:

GFIJCBT03GBXIF___RNTVNVPINGWAAIRFVADNPGVWMFHCHLDIHITWxxAMAFVVENGPDYGSSLQRPPRDLPRC
Q9AUI5_______________RNTVNVPVNGWAAIRFVADNPGAWVMHCHLDVHITWxxAMVFVVNNGPDALLSLQSPPRDLPLC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain