SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene74748

Length: 257 nt

UniGene Fasta

>sp_v3.0_unigene74748
GACGAGAATCGAATCCCGCTGGCTTTAAGGTGGAGGAGGTGAACCAGATGCAGTACTTGCATGCTGCGCTGTCTGAAACGTTAAGGCTATATCCCTCGCTCCCTATAAACTGCAAGGAAGTGATACAAGATGAGGTATTGCCCGGTGGAGTCTATTTGAAAAAGGGAACAAATCTCATGTTCCCGATATATTCCATGGGAAGGACGGAGAGCATATGGGGAGAAGACTGCAGGGAATTTAAGCCGGATAGATGGCTG

Ace file of the UniGene sp_v3.0_unigene74748

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative cytochrome P450 protein [Oryza sativa Japonica Group] gb\|AAP54351.1\| Cytochrome P450 family protein, expressed [Oryza sativa Japonica Group]	-	-	3.0e-26	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Sma3	Cytochrome P450	-	-	2.294e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	Unspecific monooxygenase.	EC:1.14.14.1	-	4.448e-17	-

Source	KEGGs	Term	e value	Identity
Sma3	Fatty acid metabolism	00071	4.448e-17	%
Sma3	Steroid hormone biosynthesis	00140	4.448e-17	%
Sma3	Caffeine metabolism	00232	4.448e-17	%
Sma3	Tryptophan metabolism	00380	4.448e-17	%
Sma3	Arachidonic acid metabolism	00590	4.448e-17	%
Sma3	Linoleic acid metabolism	00591	4.448e-17	%
Sma3	Aminobenzoate degradation	00627	4.448e-17	%
Sma3	Retinol metabolism	00830	4.448e-17	%
Sma3	Metabolism of xenobiotics by cytochrome P450	00980	4.448e-17	%
Sma3	Drug metabolism - cytochrome P450	00982	4.448e-17	%
Sma3	Drug metabolism - other enzymes	00983	4.448e-17	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	4.448e-17	%
Sma3	Metabolic pathways	01100	4.448e-17	%

Source	Gene names
Sma3	At1g13150; At1g24540; At1g63710; At2g44890; At3g26125; At5g08250; At5g23190; B0103C08-B0602B01.11; B1096A10.16; CYP86A19; CYP86A20; CYP86A21; CYP86A22; CYP86A24; CYP86B4; CYP86B5; CYP86C5v1; CYP86C5v2; CYP86C6; CYP94A3; F24D7.10; F3F19.16; F3F19.17; GSVIV

Source	GOs	Term	Type	Identity
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, E-class, group IV	IPR002403	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G08250.1	Cytochrome P450 superfamily protein chr5:2653766-2655595 REVERSE LENGTH=488	3.0e-31	62%
RefSeq	Arabidopsis thaliana	NP_196442.2	cytochrome P450 86B1 [Arabidopsis thaliana]	4.0e-31	62%
RefSeq	Populus trichocarpa	XP_002310074.1	cytochrome P450 [Populus trichocarpa]	4.0e-31	59%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLC1

Fln msg: Distance to subject end: 80 aas, your sequence is shorter than subject: 85 - 528

Fln protein: RESNPAGFKVEEVNQMQYLHAALSETLRLYPSLPINCKEVIQDEVLPGGVYLKKGTNLMFPIYSMGRTESIWGEDCREFKPDRWL

Protein Length: 86

Fln nts: GACGAGAATCGAATCCCGCTGGCTTTAAGGTGGAGGAGGTGAACCAGATGCAGTACTTGCATGCTGCGCTGTCTGAAACGTTAAGGCTATATCCCTCGCTCCCTATAAACTGCAAGGAAGTGATACAAGATGAGGTATTGCCCGGTGGAGTCTATTTGAAAAAGGGAACAAATCTCATGTTCCCGATATATTCCATGGGAAGGACGGAGAGCATATGGGGAGAAGACTGCAGGGAATTTAAGCCGGATAGATGGCTG

Fln Alignment:

GFIJCBT03GJV27___SNPAGFKVEEVNQMQYLHAALSETLRLYPSLPINCKEVIQDEVLPGGVYLKKGTNLMFPIYSMGRTESIWGEDCREFKPDRWL
B8LLC1_______________NDPVCFSKDELKQMHYLHACLSEAIRLYPPLPLDRKQVSENVVLPDGTPIKKGTVIFYIIYAMGRMESIWGNDCMEFKPERWL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain