SustainPineDB

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Assembly info
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SNPs
SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene74649

Length: 345 nt

UniGene Fasta

>sp_v3.0_unigene74649
CACGCCGACCAGGAGATGGATGAGGTCTATGCACAACTGACATTAGTTCCTGATTCCGAGAAGAATGAGAAATGCATGGAGGAACAACTTTCTGTACCTCCATCCAGCACTCCTCATATGTTCTGCAAGACGCTAACGGCTTCTGATACAAGTACACATGGCGGGTTTTCAGTTCCTCGAAGGGCTGCAGAGGACTGCTTTCCGCCCTTGGTAAGTTTTGATTTAGGTTTTGCTGATGTAACTATCGCACTCTGCACATATGATATCAGACTAGAAATCTGTGCCAATGGTATGCGGTTTGCTGTCTGCAAAGGCTTCATAGCAAGTAAGACTATCTTGAAGGTC

Ace file of the UniGene sp_v3.0_unigene74649

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative auxin response factor 3/4; Pinus pinaster (Maritime pine).	-	-	0.0	100%
Sma3	Auxin response factor, putative	-	-	1.703e-25	-

Source	Gene names
Sma3	ARF1; ARF11; ARF12; ARF14; ARF15; ARF16; ARF17; ARF19; ARF2; ARF21; ARF23; ARF24; ARF25; ARF3; ARF4; ARF5; ARF6; ARF6A; ARF6B; ARF7; ARF7A; ARF7B; ARF8; At1g19220; At1g19850; At1g30330; At1g59750; At2g33860; At5g20730; At5g37020; At5g60450; At5g62000; BIP

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	transcription activator activity	GO:0016563	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	negative regulation of cell proliferation	GO:0008285	Biological Process	-
Sma3	gravitropism	GO:0009630	Biological Process	-
Sma3	phototropism	GO:0009638	Biological Process	-
Sma3	response to ethylene stimulus	GO:0009723	Biological Process	-
Sma3	response to hormone stimulus	GO:0009725	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	blue light signaling pathway	GO:0009785	Biological Process	-
Sma3	auxin metabolic process	GO:0009850	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	positive regulation of flower development	GO:0009911	Biological Process	-
Sma3	longitudinal axis specification	GO:0009942	Biological Process	-
Sma3	fruit dehiscence	GO:0010047	Biological Process	-
Sma3	vegetative phase change	GO:0010050	Biological Process	-
Sma3	leaf senescence	GO:0010150	Biological Process	-
Sma3	abaxial cell fate specification	GO:0010158	Biological Process	-
Sma3	floral organ abscission	GO:0010227	Biological Process	-
Sma3	leaf vascular tissue pattern formation	GO:0010305	Biological Process	-
Sma3	lateral root primordium development	GO:0010386	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3		GO:0016481	Biological Process	-
Sma3	negative regulation of transcription, DNA-dependent	GO:0045892	Biological Process	-
Sma3	root development	GO:0048364	Biological Process	-
Sma3	leaf development	GO:0048366	Biological Process	-
Sma3	ovule development	GO:0048481	Biological Process	-
Sma3	meristem development	GO:0048507	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	AUX/IAA protein	IPR003311	-	-
Sma3	B3 DNA binding domain	IPR003340	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Ribosomal protein S12/S23	IPR006032	-	-
Sma3	Auxin response factor	IPR010525	-	-
Sma3	Aux/IAA-ARF-dimerisation	IPR011525	-	-
Sma3	DNA methylase, N-4 cytosine-specific, conserved site	IPR017985	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G33860.1	ETT, ARF3 Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related chr2:14325444-14328613 REVERSE LENGTH=608	2.0e-24	60%
RefSeq	Arabidopsis thaliana	NP_180942.1	auxin response factor 3 [Arabidopsis thaliana]	3.0e-24	60%
RefSeq	Populus trichocarpa	XP_002331957.1	predicted protein [Populus trichocarpa]	2.0e-24	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: E1UHY2

Fln msg: Distance to subject end: 670 aas, your sequence is shorter than subject: 115 - 919

Fln protein: HADQEMDEVYAQLTLVPDSEKNEKCMEEQLSVPPSSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLVSFDLGFADVTIALCTYDIRLEICANGMRFAVCKGFIASKTILKV

Protein Length: 116

Fln nts: CACGCCGACCAGGAGATGGATGAGGTCTATGCACAACTGACATTAGTTCCTGATTCCGAGAAGAATGAGAAATGCATGGAGGAACAACTTTCTGTACCTCCATCCAGCACTCCTCATATGTTCTGCAAGACGCTAACGGCTTCTGATACAAGTACACATGGCGGGTTTTCAGTTCCTCGAAGGGCTGCAGAGGACTGCTTTCCGCCCTTGGTAAGTTTTGATTTAGGTTTTGCTGATGTAACTATCGCACTCTGCACATATGATATCAGACTAGAAATCTGTGCCAATGGTATGCGGTTTGCTGTCTGCAAAGGCTTCATAGCAAGTAAGACTATCTTGAAGGTC

Fln Alignment:

GFIJCBT03G3CN1___HADQEMDEVYAQLTLVPDSEKNEKCMEEQLSVPPSSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPL
E1UHY2_______________HADQEMDEVYAQLTLVPDSEKNEKCMEEQLSVPPSSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain