SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene74626

Length: 313 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene74626
CTCCAACACTCACGTTGGTTACGTCTTCTCTGGAGTCATGTTTCCAACGGAGCTTCGTCTGGAAGCATACAGCCCTTATTATTTGGACGAATCCTACAGCACCTACAGGCCTTCTATCGTTTCCGTATCTAAAGATGCTGTGAGCTATGGCACTAGATTCACGGTTCAATTCTCCGTTTCAAGCTATGTTCCTAACAATATTCAGTTTACCATTTATAGTCCATCCTTCGCAACTCATGCATATTCCATGAATCAGAGGCTGCTCGTGCTTGCCTCAACCACACCAAAGAGAGTACGAGGAATATATATTGCC

Ace file of the UniGene sp_v3.0_unigene74626 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	glyoxal oxidase-related protein [Arabidopsis thaliana] gb\|AAF87115.1\|AC006434_11 F10A5.18 [Arabidopsis thaliana] gb\|AEE35738.1\| glyoxal oxidase-related protein [Arabidopsis thaliana]	-	-	2.0e-18	53%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	55%

Source	Gene names
Sma3	At1g75620; GSVIVT00014487001; PHYPADRAFT_202850; RCOM_1596620;

Source	InterPros	Term	Type	Identity
Sma3	Glyoxal oxidase, N-terminal	IPR009880	-	-
Sma3	Immunoglobulin-like fold	IPR013783	-	-
Sma3	Domain of unknown function DUF1929	IPR015202	-	-
Sma3	Galactose oxidase, beta-propeller	IPR015916	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G75620.1	glyoxal oxidase-related protein chr1:28394951-28396594 REVERSE LENGTH=547	2.0e-23	53%
RefSeq	Arabidopsis thaliana	NP_177692.1	glyoxal oxidase-related protein [Arabidopsis thaliana]	3.0e-23	53%
RefSeq	Populus trichocarpa	XP_002301997.1	predicted protein, partial [Populus trichocarpa]	8.0e-23	48%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8RX29

Fln msg: Distance to subject end: 37 aas, your sequence is shorter than subject: 104 - 495

Fln protein: SNTHVGYVFSGVMFPTELRLEAYSPYYLDESYSTYRPSIVSVSKDAVSYGTRFTVQFSVSSYVPNNIQFTIYSPSFATHAYSMNQRLLVLASTTPKRVRGIYIA

Protein Length: 105

Fln nts: CTCCAACACTCACGTTGGTTACGTCTTCTCTGGAGTCATGTTTCCAACGGAGCTTCGTCTGGAAGCATACAGCCCTTATTATTTGGACGAATCCTACAGCACCTACAGGCCTTCTATCGTTTCCGTATCTAAAGATGCTGTGAGCTATGGCACTAGATTCACGGTTCAATTCTCCGTTTCAAGCTATGTTCCTAACAATATTCAGTTTACCATTTATAGTCCATCCTTCGCAACTCATGCATATTCCATGAATCAGAGGCTGCTCGTGCTTGCCTCAACCACACCAAAGAGAGTACGAGGAATATATATTGCC

Fln Alignment:

GFIJCBT03FZFO0___SNTHVGYVFSGVMFPTELRLEAYSPYYLDESYSTYRPSIVSVSKDAVSYGTRFTVQFSVSSYVPNNIQFTIYSPSFATHAYSMNQRLLVLASTTP
D8RX29_______________SNPNVGYDFSEVLFPTELRIEAFSPPYLDSYFDGVRAEISSMSKVVIGYNSQITIEFSVS--VLGDTEATLYAPAFATHAYSMNQRLLKLESSTP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain