SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene74533

Length: 244 nt

UniGene Fasta

>sp_v3.0_unigene74533
AAATACTATCACGGCCGAACAGGAATTGTGTACAACGTCACACCACATGCTGTCGGTGTCATCCTATACAAAGTAGTCGGAAACCGATACATCGAGAAACGTGTGAGCTTGCGTGTAGAGCACGTCAAGCACTCTGCATGTCGTCAGGAATTTTTAGACAGAGTGCAAGCTAACCACGCTAAGCACGTTGAGGCCAAGGAGAAGGGCGAACGATGTGCATCACTGAAGCGAGTACATGCATTAC

Ace file of the UniGene sp_v3.0_unigene74533

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60s ribosomal protein l21-a [Coprinopsis cinerea okayama7#130] gb\|EAU92440.1\| 60s ribosomal protein l21-a [Coprinopsis cinerea okayama7#130]	-	-	7.0e-29	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%

Source	Gene names
Sma3	MICPUCDRAFT_49736; PHYPADRAFT_106900; PHYPADRAFT_158496; PHYPADRAFT_171540; PHYPADRAFT_213645;

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L21e	IPR001147	-	0.0	-
Sma3	Ribosomal protein L21e, conserved site	IPR018259	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G57860.1	Translation protein SH3-like family protein chr1:21430034-21430827 REVERSE LENGTH=164	9.0e-19	46%
RefSeq	Arabidopsis thaliana	NP_564726.1	60S ribosomal protein L21-2 [Arabidopsis thaliana]	1.0e-18	46%
RefSeq	Populus trichocarpa	XP_002304624.1	predicted protein [Populus trichocarpa]	7.0e-21	50%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NK51

Fln msg: Distance to subject end: 30 aas, your sequence is shorter than subject: 81 - 165

Fln protein: KYYHGRTGIVYNVTPHAVGVILYKVVGNRYIEKRVSLRVEHVKHSACRQEFLDRVQANHAKHVEAKEKGERCASLKRVHAL

Protein Length: 82

Fln nts: AAATACTATCACGGCCGAACAGGAATTGTGTACAACGTCACACCACATGCTGTCGGTGTCATCCTATACAAAGTAGTCGGAAACCGATACATCGAGAAACGTGTGAGCTTGCGTGTAGAGCACGTCAAGCACTCTGCATGTCGTCAGGAATTTTTAGACAGAGTGCAAGCTAACCACGCTAAGCACGTTGAGGCCAAGGAGAAGGGCGAACGATGTGCATCACTGAAGCGAGTACATGCATTAC

Fln Alignment:

GFIJCBT03GQ2Y5___KYYHGRTGIVYNVTPHAVGVILYKVVGNRYIEKRVSLRVEHVKHSACRQEFLDRVQANHAKHVEAKEKGERCASLKR
A9NK51_______________KFYHGRTGVVWNVTKRAIGVEMNKQVRNKIIKKRIHVRIEHVQPSRCAQDALLRRKNNDQLKAEAKARGEPPISTKR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain