SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene74485

Length: 192 nt

UniGene Fasta

>sp_v3.0_unigene74485
GAAGTCTCTTCTGCCTGAATGGCATGTAGACCCAACTGAAGAAATTCAAAAGCTGGAAGATAATGGAGTTGCGAAAGTATTAATTGTGCTTGATGATGACCCAACTGGAACACAAACTGTGCATGGAGTTACTGTATTAACAGAGTGGAGCATCGAGTCCCTTGTTCAACAGTTCAGAGAAAGGCCATCATG

Ace file of the UniGene sp_v3.0_unigene74485

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ketose-bisphosphate aldolase class-II-like protein [Arabidopsis thaliana] gb\|AAL60010.1\| unknown protein [Arabidopsis thaliana] gb\|AAM91809.1\| unknown protein [Arabidopsis thaliana] gb\|AEE29694.1\| ketose-bisphosphate aldolase class-II-like protein [Arabid	-	-	1.0e-14	61%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	64%

Source	Gene names
Sma3	At1g18270; GSVIVT00017865001; PHYPADRAFT_189760;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	fructose-bisphosphate aldolase activity	GO:0004332	Molecular Function	-
Sma3	phosphogluconate dehydrogenase (decarboxylating) activity	GO:0004616	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	3-hydroxyisobutyrate dehydrogenase activity	GO:0008442	Molecular Function	-
Sma3	coenzyme binding	GO:0050662	Molecular Function	-
Sma3	glycolysis	GO:0006096	Biological Process	-
Sma3	pentose-phosphate shunt	GO:0006098	Biological Process	-
Sma3	valine metabolic process	GO:0006573	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ketose-bisphosphate aldolase, class-II	IPR000771	-	-
Sma3	3-hydroxyisobutyrate dehydrogenase-related, conserved site	IPR002204	-	-
Sma3	6-phosphogluconate dehydrogenase, NADP-binding	IPR006115	-	-
Sma3	Dehydrogenase, multihelical	IPR013328	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	3-hydroxyacid dehydrogenase/reductase	IPR015815	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G18270.3	-	3.0e-19	61%
RefSeq	Arabidopsis thaliana	NP_173263.2	ketose-bisphosphate aldolase class-II-like protein [Arabidopsis thaliana]	4.0e-19	61%
RefSeq	Populus trichocarpa	XP_002322113.1	predicted protein [Populus trichocarpa]	5.0e-15	59%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9SYE4

Fln msg: Distance to subject end: 684 aas, your sequence is shorter than subject: 63 - 1193

Fln protein: KSLLPEWHVDPTEEIQKLEDNGVAKVLIVLDDDPTGTQTVHGVTVLTEWSIESLVQQFRERPS

Protein Length: 64

Fln nts: GAAGTCTCTTCTGCCTGAATGGCATGTAGACCCAACTGAAGAAATTCAAAAGCTGGAAGATAATGGAGTTGCGAAAGTATTAATTGTGCTTGATGATGACCCAACTGGAACACAAACTGTGCATGGAGTTACTGTATTAACAGAGTGGAGCATCGAGTCCCTTGTTCAACAGTTCAGAGAAAGGCCATCATG

Fln Alignment:

GFIJCBT03F6HMR___KSLLPEWHVDPTEEIQKLEDNGVAKVLIVLDDDPTGTQTVHGVTVLTEWSIESLVQQFRERP
A9SYE4_______________QALPEEWPEDVVEEILKDEKEGRAKVLVVLDDDPTGTQTVHGVSVLTEWSIDSLIKEFKSSP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain