SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene74462

Length: 448 nt

UniGene Fasta

>sp_v3.0_unigene74462
CCTTCTACTTCCCCTCTCCCATCCTCATCGGGTGCTGATCCGTATACCAGGTCTCTTCCAGCAATGGCCCCAAAATTCGACCCAGCTGAAATCAAAATCATCTACCTGAGGGCTACCGGTGGTGAGCCAGGTTCAAATGCTGCTCTTGCTCCCAAAATCGGTCCTCTTGGTCTCTCACCGAAGAAGGTCGGTGAAGATATCGCAAAGGCTACCGGTGCATGGAAAGGTTTACGGGTAACCGTCCAACTCACGATTCAAAACCGGCAAGCCAAAGTCGATGTCGTTCCCACCGCTTCTGCCCTTGTCATCAGGGCTCTTAAGGAGCCTCCACGCGACAGGAAGAAGGAGAAGAACGTTAAACACTCTGGCAACATCGCTCTTGACGAGATTATCGAAATTGCCCGTAAGATGCGTCACAAGTCTCTCGCCAAGGACCTAGCCGGTAACG

Ace file of the UniGene sp_v3.0_unigene74462

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L12 n=1 Tax=Postia placenta Mad-698-R RepID=B8P7S1_POSPM	-	-	0.0	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Sma3	60S ribosomal protein L12	-	-	6.362e-19	-

Source	Gene names
Sma3	At2g37190; At3g53430; At5g60670; CHLREDRAFT_138697; GSVIVT00018191001; GSVIVT00023193001; MICPUCDRAFT_30629; MICPUN_106714; MUP24.13; MUP24.9; OSJNba0093F12.16; OSTLU_34409; Os02g0699600; Os04g0598200; OsI_08582; OsI_17237; OsJ_08042; OsJ_16016; Ot03g0534

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	rRNA binding	GO:0019843	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L11	IPR000911	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G60670.1	Ribosomal protein L11 family protein chr5:24381066-24381566 REVERSE LENGTH=166	67%
RefSeq	Arabidopsis thaliana	NP_200875.1	60S ribosomal protein L12-3 [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002308123.1	predicted protein [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZX9

Fln msg: Distance to subject end: 37 aas, your sequence is shorter than subject: 128 - 166

Fln protein: MAPKFDPAEIKIIYLRATGGEPGSNAALAPKIGPLGLSPKKVGEDIAKATGAWKGLRVTVQLTIQNRQAKVDVVPTASALVIRALKEPPRDRKKEKNVKHSGNIALDEIIEIARKMRHKSLAKDLAGN

Protein Length: 129

Fln nts: CCTTCTACTTCCCCTCTCCCATCCTCATCGGGTGCTGATCCGTATACCAGGTCTCTTCCAGCA_-_ATGGCCCCAAAATTCGACCCAGCTGAAATCAAAATCATCTACCTGAGGGCTACCGGTGGTGAGCCAGGTTCAAATGCTGCTCTTGCTCCCAAAATCGGTCCTCTTGGTCTCTCACCGAAGAAGGTCGGTGAAGATATCGCAAAGGCTACCGGTGCATGGAAAGGTTTACGGGTAACCGTCCAACTCACGATTCAAAACCGGCAAGCCAAAGTCGATGTCGTTCCCACCGCTTCTGCCCTTGTCATCAGGGCTCTTAAGGAGCCTCCACGCGACAGGAAGAAGGAGAAGAACGTTAAACACTCTGGCAACATCGCTCTTGACGAGATTATCGAAATTGCCCGTAAGATGCGTCACAAGTCTCTCGCCAAGGACCTAGCCGGTAACG

Fln Alignment:

GFIJCBT03GYWPX___MAPKFDPAEIKIIYLRATGGEPGSNAALAPKIGPLGLSPKKVGEDIAKATGA-WKGLRVTVQLTIQNRQAKVDVVPTASALVIRALKEPPRDRKKEKNVKHSGNIALDEIIEIARKMRHKSLAKDLAG
A9NZX9_______________MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNIALDDVIEIARVMKPRSMAKELAG

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain