SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene74406

Length: 431 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene74406
GAATTATGTTACCAAAGACATGGTGGACGTTCTGCTGCAGCAGGCCGACAATCCGCAGCTGAAGCTGAGTCGAGTCAGAGTCAAAGCATTCACTCAGGCAAGCATTTACAAACTATTATCCTTTTACTTGGCGTGTGTTTTTATTATTGTCTGACCTGTTTGAGCAACTGTATAATGTTTGCAGGACATCATAGCGGGCGGCACCGAAAGCTCCGCGACGCTGGTGGAGTGGGGACTGTCGGAGCTCTTGAAAAAGCCGGAGACGTTGGAAAGAGCGGCGGAAGAGCTGGACAGAGTGGTGGGCAGAGAACGGTGGGTGGAAGAGAAGGACATTGGTGGGCTAGAGTATCTACAGTGGGTAGTGAAAGAGACGATGAGGCTTCATCCTGTGGCTCCCATGCTCGTCCCTCGTCTCTCCACTCAAAGCCTGC

Ace file of the UniGene sp_v3.0_unigene74406 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cytochrome P450 [Capsicum chinense]	-	-	8.0e-33	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Sma3	Cytochrome P450	-	-	1.639e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3	Flavonoid 3',5'-hydroxylase.	EC:1.14.13.88	-	4.566e-07	-

Source	KEGGs	Term	e value	Identity
Sma3	Flavonoid biosynthesis	00941	4.566e-07	%
Sma3	Flavone and flavonol biosynthesis	00944	4.566e-07	%
Sma3	Biosynthesis of secondary metabolites	01110	4.566e-07	%

Source	Gene names
Sma3	At2g45550; At2g45570; B1144B06.25; CYP76B7; CYP76C2; CYP76C4; CYP92A; CYP92A17v1; CYP92A17v2; CYP92A18; CYP92A19v1; CYP92A20v2; CYP92A22v1; CYP92A29; CYP92A5; F17K2.10; F17K2.8; GSVIVT00017649001; GSVIVT00019414001; GSVIVT00021694001; GSVIVT00026281001; G

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G45550.1	CYP76C4 cytochrome P450, family 76, subfamily C, polypeptide 4 chr2:18773541-18775654 REVERSE LENGTH=511	2.0e-22	53%
RefSeq	Arabidopsis thaliana	NP_182079.1	cytochrome P450 76C4 [Arabidopsis thaliana]	3.0e-22	53%
RefSeq	Populus trichocarpa	XP_002303241.1	cytochrome P450 [Populus trichocarpa]	2.0e-38	52%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NSK2

Fln msg: Distance to subject end: 132 aas, your sequence is shorter than subject: 143 - 361

Fln protein: NYVTKDMVDVLLQQADNPQLKLSRVRVKAFTQASIYKLLSFYLACVFIIV*PV*ATV*CLQDIIAGGTESSATLVEWGLSELLKKPETLERAAEELDRVVGRERWVEEKDIGGLEYLQWVVKETMRLHPVAPMLVPRLSTQSL

Protein Length: 144

Fln nts: GAATTATGTTACCAAAGACATGGTGGACGTTCTGCTGCAGCAGGCCGACAATCCGCAGCTGAAGCTGAGTCGAGTCAGAGTCAAAGCATTCACTCAGGCAAGCATTTACAAACTATTATCCTTTTACTTGGCGTGTGTTTTTATTATTGTCTGACCTGTTTGAGCAACTGTATAATGTTTGCAGGACATCATAGCGGGCGGCACCGAAAGCTCCGCGACGCTGGTGGAGTGGGGACTGTCGGAGCTCTTGAAAAAGCCGGAGACGTTGGAAAGAGCGGCGGAAGAGCTGGACAGAGTGGTGGGCAGAGAACGGTGGGTGGAAGAGAAGGACATTGGTGGGCTAGAGTATCTACAGTGGGTAGTGAAAGAGACGATGAGGCTTCATCCTGTGGCTCCCATGCTCGTCCCTCGTCTCTCCACTCAAAGCCTGC

Fln Alignment:

GFIJCBT03HBT35___NYVTKDMVDVLLQQADNPQLKLSRVRVKAFTQASIYKLLSFYLACVFIIV*PV*ATV*CLQDIIAGGTESSATLVEWGLSELLKKPETLERAAEELDRVVGRERWVEEKDIGGLEYLQWVVKETMRLHPVAPMLVPRLSTQ
A9NSK2_______________NYVAKDMMDVLLKQADDPQLNLSRIKVKAFTL-----------------------------DIIAGGTETSATLVEWGLSELLKKPEMLERATKELDRVVGRERWVEEKDMGGLEYVQWIVKETMRLHPVAPLLVPHLSTQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain