SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene74366

Length: 275 nt

UniGene Fasta

>sp_v3.0_unigene74366
CATTCTTGTGATGTATGTAGATGATTTTATCATTACAGGCAACCATGATGATCATATTGCACAGGTCAAAAAGGAGTTACAAGCAGGTTTTAAGATGACAGATTTGGGATTACTTCACTACTATCTTGGAGTTGAAGTCTTCCAACGTCCACATCATATTTTCATTACTCAGAGTAAATATGCAGCAGAGGTTATTCAGCGATTTGGCATGCAAGATTGCAAGCCCGTTCTCACCCCCATGGAGAAAAGCTTGAAACTTCCAAAATTTGAAGGGG

Ace file of the UniGene sp_v3.0_unigene74366

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	T26F17.17 n=1 Tax=Arabidopsis thaliana RepID=Q9SFE1_ARATH	-	-	6.0e-19	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%

Source	Gene names
Sma3	F11I4_21; LOC_Os11g35590; OSIGBa0135C09.3; OSJNBa0088A01.6; OSJNBb0026E15.10; Os04g0196500; Os04g0582400; Os06g0477500; T15M6.14; T18I24.5; T20K12.230; T28P6.8;

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKV8

Fln msg: Distance to subject end: 100 aas, your sequence is shorter than subject: 91 - 363

Fln protein: ILVMYVDDFIITGNHDDHIAQVKKELQAGFKMTDLGLLHYYLGVEVFQRPHHIFITQSKYAAEVIQRFGMQDCKPVLTPMEKSLKLPKFEG

Protein Length: 92

Fln nts: CATTCTTGTGATGTATGTAGATGATTTTATCATTACAGGCAACCATGATGATCATATTGCACAGGTCAAAAAGGAGTTACAAGCAGGTTTTAAGATGACAGATTTGGGATTACTTCACTACTATCTTGGAGTTGAAGTCTTCCAACGTCCACATCATATTTTCATTACTCAGAGTAAATATGCAGCAGAGGTTATTCAGCGATTTGGCATGCAAGATTGCAAGCCCGTTCTCACCCCCATGGAGAAAAGCTTGAAACTTCCAAAATTTGAAGGGG

Fln Alignment:

GFIJCBT03G9CYU___ILVMYVDDFIITGNHDDHIAQVKKELQAGFKMTDLGLLHYYLGVEVFQRPHHIFITQSKYAAEVIQRFGMQDCKPVLTPMEKSLKLPK
B8LKV8_______________IVCLYVDDLIYTGNLT--IDMFKSAMKKEFEMTDLGLMNYFLGIEVTQKDKGIFICQSKYARDVLKRFRMINCSPVSTPVGVGTKLSR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain