SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene74335

Length: 268 nt

UniGene Fasta

>sp_v3.0_unigene74335
AGAATTGAATACTAACACACAGATAAGTGTAAAGCCAAATCCATGGAAGGTCTGCACAGTAAGTCAAGTAGAGGAAACGAAACTTATATTGAGGATGGTGCCCATCTGGTTGTCTTGCTTAATTTTTGGAATAGCTGCAGTATCACAGAACACATCGTTCTTCATAAAGCAGGGAGGCACCATGGATAGAAGCATGGGTTCCCACTTTCAAATCCCGCCGGTTTCTCTTGGCGTCTTTTCCGCCATCTCTGGACTTGCTTTTGTTACT

Ace file of the UniGene sp_v3.0_unigene74335

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peptide transporter, putative n=1 Tax=Ricinus communis RepID=B9RGA9_RICCO	-	-	2.0e-16	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Sma3	Chromosome chr18 scaffold_122, whole genome shotgun sequence	-	-	1.433e-06	-

Source	Gene names
Sma3	GSVIVT00001844001; GSVIVT00001845001; LOC_Os03g60850; OSJNBb0081B07.12; Os03g0823500; OsI_14122; OsJ_13171; POPTRDRAFT_819189; RCOM_1452620; VITISV_024373;

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	oligopeptide transport	GO:0006857	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Oligopeptide transporter	IPR000109	-	0.0	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G54450.1	Major facilitator superfamily protein chr3:20158534-20161937 FORWARD LENGTH=555	7.0e-21	51%
RefSeq	Arabidopsis thaliana	NP_974431.2	putative peptide/nitrate transporter [Arabidopsis thaliana]	9.0e-21	51%
RefSeq	Populus trichocarpa	XP_002297740.1	predicted protein [Populus trichocarpa]	4.0e-21	52%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ68

Fln msg: Distance to subject end: 182 aas, your sequence is shorter than subject: 89 - 407

Fln protein: ELNTNTQISVKPNPWKVCTVSQVEETKLILRMVPIWLSCLIFGIAAVSQNTSFFIKQGGTMDRSMGSHFQIPPVSLGVFSAISGLAFVT

Protein Length: 90

Fln nts: AGAATTGAATACTAACACACAGATAAGTGTAAAGCCAAATCCATGGAAGGTCTGCACAGTAAGTCAAGTAGAGGAAACGAAACTTATATTGAGGATGGTGCCCATCTGGTTGTCTTGCTTAATTTTTGGAATAGCTGCAGTATCACAGAACACATCGTTCTTCATAAAGCAGGGAGGCACCATGGATAGAAGCATGGGTTCCCACTTTCAAATCCCGCCGGTTTCTCTTGGCGTCTTTTCCGCCATCTCTGGACTTGCTTTTGTTACT

Fln Alignment:

GFIJCBT03F62I3___ELNTNTQISVKPNPWKVCTVSQVEETKLILRMVPIWLSCLIFGIAAVSQNTSFFIKQGGTMDRSMGSHFQIPPVSLGVFSAISGLAFV
B8LQ68_______________EWNTDTQGSAKPNPWKVCTVTQVEETKLILRMVPIWFSSLTFGLAAVSQNATFFIRQGHTMDRSMGSHFKIPAVSLGVFSTIFGLAFV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain