SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene74320

Length: 330 nt

UniGene Fasta

>sp_v3.0_unigene74320
CATGTCGTGAAGGCAATTGAAGCACTTTGTGGGTTTTGAAACTGTGACTACTGGGGCTGCAACGCTTCTCTGCTGAACACAAATTCAAGCTGTCAAGATTAGATCACATATTTCTTACACGGGTTTGCTCAGAAACTGCAGGTGGCATTCCAGGTCTTCTCCTGACGATGGCTGGCATAGGGGATGATGGAATGACAGTACGCAAATTTTATGCCCTCTTTTGCGTTGGGAGATTTTTTCTAGGAGGTTAACATCTGGGGTCCATCAGATTTAGAATTTTTAACTGGTGCAATGCGGTCATTTATTCCAAATTCTGCTGTTGTTCACACC

Ace file of the UniGene sp_v3.0_unigene74320

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein Sb03g000750; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	0.0	78%

Source	Gene names
Sma3	At1g52160; At3g16260/MYA6_19; C117; F9I5.1; GSVIVT00034348001; OsI_01027; OsJ_00998; PHYPADRAFT_216224; POPTRDRAFT_829561; RCOM_1492180; VITISV_011432;

Source	GOs	Term	Type	Identity
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	intracellular protein transport	GO:0006886	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Beta-lactamase-like	IPR001279	-	-
Sma3	VHS	IPR002014	-	-
Sma3	Adenosine/AMP deaminase active site	IPR006650	-	-
Sma3	ENTH/VHS	IPR008942	-	-
Sma3	Armadillo-like helical	IPR011989	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G16260.1	TRZ4 tRNAse Z4 chr3:5509397-5513118 FORWARD LENGTH=942	8.0e-25	74%
RefSeq	Arabidopsis thaliana	NP_188247.2	tRNAse Z4 [Arabidopsis thaliana]	1.0e-24	74%
RefSeq	Populus trichocarpa	XP_002298234.1	predicted protein [Populus trichocarpa]	3.0e-25	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: C5XJM2

Fln msg: Separated hits, possible frame ERROR between 200 and 226, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 711 aas, your sequence is shorter than subject: 110 - 932

Fln protein: CREGN*STLWVLKL*LLGLQRFSAEHKFKLSRLDHIFLTRVCSETAGGIPGLLLTMAGIGDDGMTxxxxxxxxxxLGDFF*EVNIWGPSDLEFLTGAMRSFIPNSAVVHT

Protein Length: 111

Fln nts: CATGTCGTGAAGGCAATTGAAGCACTTTGTGGGTTTTGAAACTGTGACTACTGGGGCTGCAACGCTTCTCTGCTGAACACAAATTCAAGCTGTCAAGATTAGATCACATATTTCTTACACGGGTTTGCTCAGAAACTGCAGGTGGCATTCCAGGTCTTCTCCTGACGATGGCTGGCATAGGGGATGATGGAATGACAGTxxxxxxxxxxxxxxxxxxxxxxxxxxxGTTGGGAGATTTTTTCTAGGAGGTTAACATCTGGGGTCCATCAGATTTAGAATTTTTAACTGGTGCAATGCGGTCATTTATTCCAAATTCTGCTGTTGTTCACACC

Fln Alignment:

GFIJCBT03GAEB3___QRFSAEHKFKLSRLDHIFLTRVCSETAGGIPGLLLTMAGIGDDGMTVxxxxxxxxxLGDFF*EVNIWGPSDLEFLTGAMRSFIPNSAVVHT
C5XJM2_______________QRFCTEHKIKLSKIDHIFLTRVCSETAGGLPGLVLTLAGIGDEGMSVxxxxxxxxxIGDEGMSVNIWGPSDLDFLAGAMRSFIPNRAMLHT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain