SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene74298

Length: 318 nt

UniGene Fasta

>sp_v3.0_unigene74298
GGAAATCCAAGAAGGGAAAGGTGGTGTGAAGGTGTGCGTTACAGGAGCAGGGGGGTACATCGGATCATGGCTCGTCAAGAATCTTCTCCAAAGAGGCTACACCGTCAACGCCACTCTCAGAGATCCACAAAATGAGGCAAAAATTGGGCCTCTGCTGTCGCTGCCTGGGGCTGCAGAGAGACTGAAGCTCTTCCAGGCAGATTTGTGCGAAGAGCACGCCTTCGATTCCGCAGTGGAGGGCTGTCAAGGGGTGTTCCACGTGGCTAGTCCTATGGACTTTTCCAAACTCACAGAGGATGATTTTGTTGGGCCTGCTGT

Ace file of the UniGene sp_v3.0_unigene74298

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Anthocyanidin reductase n=1 Tax=Ginkgo biloba RepID=Q5XLY0_GINBI	-	-	2.0e-28	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Sma3	Dihydroflavonol 4-reductase	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Dihydrokaempferol 4-reductase.	EC:1.1.1.219	-	6.847e-38	-

Source	KEGGs	Term	e value	Identity
Sma3	Flavonoid biosynthesis	00941	6.847e-38	%
Sma3	Biosynthesis of phenylpropanoids	01061	6.847e-38	%
Sma3	Metabolic pathways	01100	6.847e-38	%
Sma3	Biosynthesis of secondary metabolites	01110	6.847e-38	%

Source	Gene names
Sma3	A; A1; A1 (Teosinte); A1* (second gene); A1* (second gene)/ (Teosinte); A1-a; A1-b; ADH; AN6; ANT18; AebiDFR-S1; AeloDFR-S1; AeseDFR-S1; AeshDFR-S1; AespDFR-S1; AespDFR-S2; AespDFR-S3; AespDFR-S4; AespDFR-S5; AespDFR-S6; AesqDFR-D1; AesqDFR-D2; ApDFR; At1

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	extrinsic to endoplasmic reticulum membrane	GO:0042406	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	transcription repressor activity	GO:0016564	Molecular Function	-
Sma3	dihydrokaempferol 4-reductase activity	GO:0045552	Molecular Function	-
Sma3	coenzyme binding	GO:0050662	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	regulation of nitrogen utilization	GO:0006808	Biological Process	-
Sma3	flavonoid biosynthetic process	GO:0009813	Biological Process	-
Sma3	cellular metabolic process	GO:0044237	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	-
Sma3	NmrA-like	IPR008030	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G09490.1	NAD(P)-binding Rossmann-fold superfamily protein chr1:3064172-3065815 FORWARD LENGTH=322	6.0e-33	64%
RefSeq	Arabidopsis thaliana	NP_172420.1	Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana]	8.0e-33	64%
RefSeq	Populus trichocarpa	XP_002314050.1	cinnamoyl CoA reductase-like protein [Populus trichocarpa]	4.0e-32	57%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P186

Fln msg: Distance to subject end: 120 aas, atg_distance in limit (1-15): atg_distance = 2, W2: There is no M at the beginning, your sequence is shorter than subject: 105 - 227

Fln protein: EIQEGKGGVKVCVTGAGGYIGSWLVKNLLQRGYTVNATLRDPQNEAKIGPLLSLPGAAERLKLFQADLCEEHAFDSAVEGCQGVFHVASPMDFSKLTEDDFVGPA

Protein Length: 106

Fln nts: GGAAATCCAAGAAGGGAAAGGTGGTGTGAAGGTGTGCGTTACAGGAGCAGGGGGGTACATCGGATCATGGCTCGTCAAGAATCTTCTCCAAAGAGGCTACACCGTCAACGCCACTCTCAGAGATCCACAAAATGAGGCAAAAATTGGGCCTCTGCTGTCGCTGCCTGGGGCTGCAGAGAGACTGAAGCTCTTCCAGGCAGATTTGTGCGAAGAGCACGCCTTCGATTCCGCAGTGGAGGGCTGTCAAGGGGTGTTCCACGTGGCTAGTCCTATGGACTTTTCCAAACTCACAGAGGATGATTTTGTTGGGCCTGCTGT

Fln Alignment:

GFIJCBT03FS2V6___EIQEGKGGVKVCVTGAGGYIGSWLVKNLLQRGYTVNATLRDPQNEAKIGPLLSLPGAAERLKLFQADLCEEHAFDSAVEGCQGVFHVASPMDFSKLTEDDFVGPA
A9P186_______________QIQEAKAGVKMCVTGAGGYIGSWLVKNLLQRGYAVNATLRDPQNEAKAGPLLSLPGAAERLKLFQADLCEEKAFDSAVEGCEGVFHVASPMDFSKLSEDDFVEPA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain