SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene74248

Length: 177 nt

UniGene Fasta

>sp_v3.0_unigene74248
TGCCTCAAACTGAAGCTTTGGTGTGTCTGCCCTTCGCAGGAAATTAACGAGGTAAGGAAGACACACCAAAGCTTCAGTTTGAGGCAGCTTGGGCTTTAACGAATATCGCATCAGGAACAACAGAACACACTAGTGCTGTGATTGAGCATGGTGCAGTTCCTCTTTTTGTCCAACTTC

Ace file of the UniGene sp_v3.0_unigene74248

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Importin alpha, putative n=1 Tax=Ricinus communis RepID=B9RFK9_RICCO	-	-	1.0e-12	80%
FL-Next	sp=Importin subunit alpha-1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	75%
Sma3	Importin alpha, putative	-	-	4.246e-18	-

Source	Gene names
Sma3	AT1G09270; At1g02690; At1g09270; At3g05720; At3g06720; At4g02150; At5g49310; B1045F02.27; BIMPa; CHLREDRAFT_139246; F18C1.1; F3E22.14; GSVIVT00022582001; GSVIVT00022647001; GSVIVT00028070001; GSVIVT00033097001; IPA1; Impa-2; Impa-4; Impa3; KAP1; KAP2; LOC

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nuclear pore	GO:0005643	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	protein transporter activity	GO:0008565	Molecular Function	-
Sma3	protein import into nucleus	GO:0006606	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	symbiont intracellular protein transport in host	GO:0030581	Biological Process	-
Sma3	induction by symbiont in host of tumor, nodule, or growth	GO:0044005	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	Importin-alpha, importin-beta-binding domain	IPR002652	-	-
Sma3	Armadillo-like helical	IPR011989	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G49310.1	IMPA-5 importin alpha isoform 5 chr5:19992016-19994516 REVERSE LENGTH=519	1.0e-16	80%
RefSeq	Arabidopsis thaliana	NP_199742.1	importin alpha isoform 5 [Arabidopsis thaliana]	2.0e-16	80%
RefSeq	Populus trichocarpa	XP_002319478.1	predicted protein [Populus trichocarpa]	1.0e-16	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q96321

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 366 aas, your sequence is shorter than subject: 58 - 532

Fln protein: PQTEALVCLPFAGN*RGKEDTPKLQFEAAWALTNIASGTTEHTSAVIEHGAVPLFVQL

Protein Length: 59

Fln nts: TGCCTCAAACTGAAGCTTTGGTGTGTCTGCCCTTCGCAGGAAATTAACGAGGTAAGGAAGACACACCAAAGCTTCAGTTTGAGGCAGCTTGGGCTTTAACGAATATCGCATCAGGAACAACAGAACACACTAGTGCTGTGATTGAGCATGGTGCAGTTCCTCTTTTTGTCCAACTTC

Fln Alignment:

GFIJCBT03G5OA9___KEDTPKLQFEAAWALTNIASGTTEHTSAVIEHGAVPLFVQL
Q96321_______________KEDYPAIQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain