SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene74121

Length: 334 nt

UniGene Fasta

>sp_v3.0_unigene74121
ATGCTGGTGTGTTTGGGGCTTTGCTTGGTGCTTGCAGAATTCACTGCAATGTAGAGATAGGAGAATGGGCCGCAAATCAGCTTTTTGATTTAGAACCTGAAAATGTAGGATATTATGTACTACTGTCAAATTTATATGCGGATGTTGGCAGATGGGATGGAGTAGCAAAAATTAGAACAATGATCAAAGGTAGGGGACTAAAAAAGTGGCCAGGATGCAGTTGGATAGAGGTGAAAAACAGATTCCATGCATTCCGCGCAGGAGACAAATCACATCCGCAAGCAGCGAAAATCTATGCAATGCTAGAAAGGTTGGCTGAGGAGATGAAGAACTT

Ace file of the UniGene sp_v3.0_unigene74121

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Sma3	Pentatricopeptide repeat-containing protein, putative	-	-	8.429e-10	-

Source	Gene names
Sma3	57h21.3; At1g08070; At1g09410; At1g15510; At1g20230; At2g03880; At3g12770; At3g49140; At3g57430; At3g63370; At4g02750; At4g18750; At4g21300; At5g44230; B1032F05.19; B1080A02.28; F14J9.7; F16M2_220; F28A21.160; F2K15.2; GSVIVT00000282001; GSVIVT00000680001

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	phloem or xylem histogenesis	GO:0010087	Biological Process	-
Sma3	leaf vascular tissue pattern formation	GO:0010305	Biological Process	-
Sma3	cotyledon vascular tissue pattern formation	GO:0010588	Biological Process	-
Sma3	leaf development	GO:0048366	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Armadillo	IPR000225	-	-
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Uncharacterised protein family Cys-rich	IPR006461	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G49142.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr3:18215788-18217848 REVERSE LENGTH=686	9.0e-34	55%
RefSeq	Arabidopsis thaliana	NP_001190038.1	tetratricopeptide repeat-like family protein [Arabidopsis thaliana]	1.0e-33	55%
RefSeq	Populus trichocarpa	XP_002305733.1	predicted protein [Populus trichocarpa]	5.0e-37	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ADG9

Fln msg: Distance to subject end: 93 aas, your sequence is shorter than subject: 110 - 312

Fln protein: AGVFGALLGACRIHCNVEIGEWAANQLFDLEPENVGYYVLLSNLYADVGRWDGVAKIRTMIKGRGLKKWPGCSWIEVKNRFHAFRAGDKSHPQAAKIYAMLERLAEEMKN

Protein Length: 111

Fln nts: ATGCTGGTGTGTTTGGGGCTTTGCTTGGTGCTTGCAGAATTCACTGCAATGTAGAGATAGGAGAATGGGCCGCAAATCAGCTTTTTGATTTAGAACCTGAAAATGTAGGATATTATGTACTACTGTCAAATTTATATGCGGATGTTGGCAGATGGGATGGAGTAGCAAAAATTAGAACAATGATCAAAGGTAGGGGACTAAAAAAGTGGCCAGGATGCAGTTGGATAGAGGTGAAAAACAGATTCCATGCATTCCGCGCAGGAGACAAATCACATCCGCAAGCAGCGAAAATCTATGCAATGCTAGAAAGGTTGGCTGAGGAGATGAAGAACTT

Fln Alignment:

GFIJCBT03F019C___AGVFGALLGACRIHCNVEIGEWAANQLFDLEPENVGYYVLLSNLYADVGRWDGVAKIRTMIKGRGLKKWPGCSWIEVKNRFHAFRAGDKSHPQAAKIYAMLERLAEEMK
D5ADG9_______________ASVWGAFLGSCRIHCNIELGERVAELLLNLDPDNAGYYVLLSNIYAAAGRWDDVAKVRKMMKEKDVKKSPGCSLIEVNNKLHSFVVGDISHPQTEAIYAMLETLARQME

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain