SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene74116

Length: 206 nt

UniGene Fasta

>sp_v3.0_unigene74116
ACGACAAAGACCCTGACCTCAAGAAGTTACGTGCAGGGCTTTCTAATGCCATTCTAGCAGAGAAACCGAATGTGAAGTGGGATGATGTTGCAGGTCTGGATGGAGCGAAAGCTTCCCTCAAGGAAGCTGTTATTCTTCCTATCAAATTTCCTCATCTCTTCACTGGAAAACGGACACCGTGGAAAGGTATCTTGCTATATGGACCG

Ace file of the UniGene sp_v3.0_unigene74116

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	vacuolar sorting ATPase Vps4 [Aspergillus fumigatus Af293] gb\|EAL92645.1\| vacuolar sorting ATPase Vps4, putative [Aspergillus fumigatus Af293] gb\|EDP52808.1\| vacuolar sorting ATPase Vps4, putative [Aspergillus fumigatus A1163]	-	-	2.0e-24	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%

Source	ECs	Term	Type	e value	Identity
Sma3	Microtubule-severing ATPase.	EC:3.6.4.3	-	3.794e-08	-

Source	Gene names
Sma3	At1g08270; At2g27600; B1103G11.33; CHLREDRAFT_181992; GSVIVT00001616001; GSVIVT00011401001; MICPUCDRAFT_67802; MICPUN_113360; OSTLU_26031; Os02g0159900; OsI_00329; OsI_00332; OsJ_00315; OsJ_00317; OsJ_05463; Ot10g00630; P0019D06.2; PHATRDRAFT_30898; PHYPA

Source	GOs	Term	Type	Identity
Sma3	multivesicular body	GO:0005771	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	endosome organization	GO:0007032	Biological Process	-
Sma3	vesicle-mediated transport	GO:0016192	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	MIT	IPR007330	-	-
Sma3	Vps4 oligomerisation, C-terminal	IPR015415	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G27600.1	SKD1, VPS4, ATSKD1 AAA-type ATPase family protein chr2:11781226-11783730 FORWARD LENGTH=435	1.0e-27	67%
RefSeq	Arabidopsis thaliana	NP_180328.1	vacuolar protein-sorting-associated protein 4 [Arabidopsis thaliana]	1.0e-27	67%
RefSeq	Populus trichocarpa	XP_002313671.1	predicted protein [Populus trichocarpa]	1.0e-27	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P2N1

Fln msg: Distance to subject end: 265 aas, your sequence is shorter than subject: 68 - 439

Fln protein: DKDPDLKKLRAGLSNAILAEKPNVKWDDVAGLDGAKASLKEAVILPIKFPHLFTGKRTPWKGILLYGP

Protein Length: 69

Fln nts: ACGACAAAGACCCTGACCTCAAGAAGTTACGTGCAGGGCTTTCTAATGCCATTCTAGCAGAGAAACCGAATGTGAAGTGGGATGATGTTGCAGGTCTGGATGGAGCGAAAGCTTCCCTCAAGGAAGCTGTTATTCTTCCTATCAAATTTCCTCATCTCTTCACTGGAAAACGGACACCGTGGAAAGGTATCTTGCTATATGGACCG

Fln Alignment:

GFIJCBT03HEW37___KDPDLKKLRAGLSNAILAEKPNVKWDDVAGLDGAKASLKEAVILPIKFPHLFTGKRTPWKGILLYGP
A9P2N1_______________EDPEQAKLRSGLNSAIIREKPNVKWTDVAGLESAKQALQEAVILPVKFPQFFTGKRKPWRAFLLYGP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain