SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene74062

Length: 417 nt

UniGene Fasta

>sp_v3.0_unigene74062
ATTTCCTATACCAGATTCTACGAGGACTTAAATATGTCCATTCTGCAGGTGTTGTTCATCGTGACTTGAAGCCCAGCAATATTCTTGTCAACGAGAACTGCGACCTCAAGATTTGCGATTTCGGACTGGCCAGAATCCAAGATCCGCAGATGACGGGATACGTTTCTACACGATATTACCGTGCCCCGGAGATTATGCTCACATGGCAGAAGTATGATGTGGAGGTTGATATCTGGAGCGCGGGGTGCATTTTCGCAGAAATGCTCGAGGGAAAGCCGTTGTTTCCTGGGAAAGACCATGTCAACCAATTCTCTATCATTACTGAGCTTCTTGGGACGCCGCCCGATGACGTCATTCAGACTATCTGCAGCGAAAATACGTTACGATTCGTACAATCATTACCGAAGCGAGCGCGCC

Ace file of the UniGene sp_v3.0_unigene74062

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Mitogen-activated protein kinase HOG1 (Fragment) n=1 Tax=Alternaria solani RepID=D4NW87_9PLEO	-	-	0.0	99%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Sma3	MAP kinase	-	-	2.115e-39	-

Source	ECs	Term	Type	e value	Identity
Sma3	Mitogen-activated protein kinase.	EC:2.7.11.24	-	0.0	-

Source	Gene names
Sma3	AP22.98; AT1G10210; Asmap1; At1g01560; At1g07880; At1g10210; At1g18150; At1g59580; At1g73670; At2g18170; At2g42880; At2g43790; At3g18040; At3g45640; At3g59790; At4g11330; At4g36450; BIMK1; C7A10.910; CHLREDRAFT_193901; CHLREDRAFT_78072; CrMPK2; ERK1; F14N

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	MAP kinase activity	GO:0004707	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	activation of MAPK activity involved in osmosensory signaling pathway	GO:0000169	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	plant-type hypersensitive response	GO:0009626	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	-
Sma3	camalexin biosynthetic process	GO:0010120	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-
Sma3	response to hydrogen peroxide	GO:0042542	Biological Process	-
Sma3	ovule development	GO:0048481	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	MAP kinase, conserved site	IPR003527	-	-
Sma3	Dihydroneopterin aldolase/epimerase domain	IPR006157	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	JNK MAP kinase	IPR008351	-	-
Sma3	MAP kinase, p38	IPR008352	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Pleckstrin homology-like domain	IPR011993	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G43790.1	ATMPK6, MPK6, MAPK6, ATMAPK6 MAP kinase 6 chr2:18138477-18140693 FORWARD LENGTH=395	57%
RefSeq	Arabidopsis thaliana	NP_181907.1	mitogen-activated protein kinase 6 [Arabidopsis thaliana]	57%
RefSeq	Populus trichocarpa	XP_002314017.1	predicted protein [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PPV5

Fln msg: Distance to subject end: 88 aas, your sequence is shorter than subject: 138 - 390

Fln protein: FLYQILRGLKYVHSAGVVHRDLKPSNILVNENCDLKICDFGLARIQDPQMTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKDHVNQFSIITELLGTPPDDVIQTICSENTLRFVQSLPKRAR

Protein Length: 139

Fln nts: ATTTCCTATACCAGATTCTACGAGGACTTAAATATGTCCATTCTGCAGGTGTTGTTCATCGTGACTTGAAGCCCAGCAATATTCTTGTCAACGAGAACTGCGACCTCAAGATTTGCGATTTCGGACTGGCCAGAATCCAAGATCCGCAGATGACGGGATACGTTTCTACACGATATTACCGTGCCCCGGAGATTATGCTCACATGGCAGAAGTATGATGTGGAGGTTGATATCTGGAGCGCGGGGTGCATTTTCGCAGAAATGCTCGAGGGAAAGCCGTTGTTTCCTGGGAAAGACCATGTCAACCAATTCTCTATCATTACTGAGCTTCTTGGGACGCCGCCCGATGACGTCATTCAGACTATCTGCAGCGAAAATACGTTACGATTCGTACAATCATTACCGAAGCGAGCGCGCC

Fln Alignment:

GFIJCBT03GT2BO___FLYQILRGLKYVHSAGVVHRDLKPSNILVNENCDLKICDFGLARIQDPQ--MTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKDHVNQFSIITELLGTPPDDVIQTICSENTLRFVQSLPKRAR
C0PPV5_______________FLYQILRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARITSETDFMTEYVVTRWYRAPELLLNSSDYTAAIDVWSVGCIFMELMNRQPLFPGRDHVHQLRLLTELIGTPTEADLGFVRSDNARRFIRQLPQYPR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain