SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene74003

Length: 408 nt

UniGene Fasta

>sp_v3.0_unigene74003
TCAAAGTGCAAAAGATTGGTATACATTTCAAAGTAGCTTTCATGGCTGCAATATACAGGAAAGGTTTGCTTCTTTCTAGTCAAGCAAGGCAAAGACATACGAGTGGTGAGATTATCAATTATATGAGTGTAGATGCTGAGCGTATTGGGGATTTCAGTTGGTATCTACAGGAGTTTTGGAGTGTGCCTCTGCAGGTTCTTGTGGCCCTGTTTGTTTTATATAAGAGCTTAGGCTTGGCCTCACTTGTAGGGCTATCAGCCATAGTGTTAATTATGATTGGAAATTTACCTCTTGGAAATTTGCAGGAAAAGTTTCAGGATAAGATTATGGAAGCAAAAGACCAGAGGATGAAAGCCACATCGGAGACATTGAGAAACATGAAGATATTAAAATTACAGGCTTGGGAGA

Ace file of the UniGene sp_v3.0_unigene74003

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MRP-like ABC transporter [Arabidopsis thaliana]	-	-	4.0e-37	54%
FL-Next	Isoform 2 of ABC transporter C family member 3 OS=Arabidopsis thaliana GN=ABCC3	-	-	0.0	60%
Sma3	Multidrug resistance protein ABC transporter family	-	-	8.407e-30	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	2.415e-06	-
Sma3	Xenobiotic-transporting ATPase.	EC:3.6.3.44	-	1.292e-18	-

Source	Gene names
Sma3	ABC_transporter_TA3B63B13-1; At1g04120; At3g13080; At3g13090; At3g13100; At3g60160; At3g60970; EST2; F20D22.11; FeMRP3; GSVIVT00002490001; GSVIVT00006470001; GSVIVT00006491001; GSVIVT00011051001; GSVIVT00018959001; GSVIVT00028494001; GSVIVT00033320001; GS

Source	GOs	Term	Type	Identity
Sma3	plant-type vacuole	GO:0000325	Cellular Component	-
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sulfonylurea receptor activity	GO:0008281	Molecular Function	-
Sma3	xenobiotic-transporting ATPase activity	GO:0008559	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	chlorophyll catabolite transmembrane transporter activity	GO:0010290	Molecular Function	-
Sma3	protein disulfide oxidoreductase activity	GO:0015035	Molecular Function	-
Sma3	glutathione S-conjugate-exporting ATPase activity	GO:0015431	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of substances	GO:0042626	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	cellular potassium ion homeostasis	GO:0030007	Biological Process	-
Sma3	cell redox homeostasis	GO:0045454	Biological Process	-
Sma3	response to other organism	GO:0051707	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Neuraxin/MAP1B repeat	IPR000102	-	-
Sma3	Aminotransferase, class V/Cysteine desulfurase	IPR000192	-	-
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	Glutaredoxin	IPR002109	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G13080.1	ATMRP3, MRP3, ABCC3 multidrug resistance-associated protein 3 chr3:4196019-4201250 REVERSE LENGTH=1514	5.04467e-44	60%
RefSeq	Arabidopsis thaliana	NP_974299.1	ABC transporter C family member 3 [Arabidopsis thaliana]	5.04467e-44	60%
RefSeq	Populus trichocarpa	XP_002321297.1	multidrug resistance protein ABC transporter family [Populus trichocarpa]	3.99931e-42	54%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LK64-2

Fln msg: Distance to subject end: 968 aas, your sequence is shorter than subject: 135 - 1489

Fln protein: KVQKIGIHFKVAFMAAIYRKGLLLSSQARQRHTSGEIINYMSVDAERIGDFSWYLQEFWSVPLQVLVALFVLYKSLGLASLVGLSAIVLIMIGNLPLGNLQEKFQDKIMEAKDQRMKATSETLRNMKILKLQAWE

Protein Length: 136

Fln nts: TCAAAGTGCAAAAGATTGGTATACATTTCAAAGTAGCTTTCATGGCTGCAATATACAGGAAAGGTTTGCTTCTTTCTAGTCAAGCAAGGCAAAGACATACGAGTGGTGAGATTATCAATTATATGAGTGTAGATGCTGAGCGTATTGGGGATTTCAGTTGGTATCTACAGGAGTTTTGGAGTGTGCCTCTGCAGGTTCTTGTGGCCCTGTTTGTTTTATATAAGAGCTTAGGCTTGGCCTCACTTGTAGGGCTATCAGCCATAGTGTTAATTATGATTGGAAATTTACCTCTTGGAAATTTGCAGGAAAAGTTTCAGGATAAGATTATGGAAGCAAAAGACCAGAGGATGAAAGCCACATCGGAGACATTGAGAAACATGAAGATATTAAAATTACAGGCTTGGGAGA

Fln Alignment:

GFIJCBT03HHD2I___KVQKIGIHFKVAFMAAIYRKGLLLSSQARQRHTSGEIINYMSVDAERIGDFSWYLQEFWSVPLQVLVALFVLYKXXXXXXXXXXXXIVLIMIGNLPLGNLQEKFQDKIMEAKDQRMKATSETLRNMKILKLQAWE
Q9LK64-2_____________RLQKVGIRMRSALVAMIYEKGLTLSCQSKQGRTSGEIINFMTVDAERIGNFSWYMHDPWMVLLQVGLALWILYRNLGLASIAALVATIIVMLINFPFGRMQERFQEKLMEAKDSRMKSTSEILRNMRILKLQGWE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain