SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene73969

Length: 236 nt

UniGene Fasta

>sp_v3.0_unigene73969
ACGTCCGCTGGAATGCTCTCAACGGGCCTATTCCAGTGAAATTGGGCCTGTTGCACAAACTCCGCGTCCTCAATCTTTCTGCAAACTCTCTGGAAGGAGGAATTCCACCACAGATTGGCCATCTTAAAGCTTTGCGAGTTCTTGATCTCAGCGAGAATGGGATTGAGGGTTTTATTCCAGTTGAGTTGGGCCATCTTAAAGCGTTGCGAATTCTTGATCTCAGCTAGAATGGGATT

Ace file of the UniGene sp_v3.0_unigene73969

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus RepID=D8LF46_ECTSI	-	-	7.0e-13	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%

Source	Gene names
Sma3	GSVIVT00017832001; GSVIVT00025271001; OSJNBa0083M16.2; Os01g0132100; OsI_23511; P0504H10.33;

Source	GOs	Term	Type	Identity
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G47570.1	Leucine-rich repeat protein kinase family protein chr3:17527611-17530748 FORWARD LENGTH=1010	9.0e-15	50%
RefSeq	Arabidopsis thaliana	NP_001190595.1	LRR receptor-like serine/threonine-protein kinase ERL1 [Arabidopsis thaliana]	6.0e-15	52%
RefSeq	Populus trichocarpa	XP_002300597.1	predicted protein [Populus trichocarpa]	4.0e-15	48%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLA8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 106 aas, your sequence is shorter than subject: 75 - 914

Fln protein: VRWNALNGPIPVKLGLLHKLRVLNLSANSLEGGIPPQIGHLKALRVLDLSENGIEGFIPVELGHLKALRILDLS*

Protein Length: 76

Fln nts: ACGTCCGCTGGAATGCTCTCAACGGGCCTATTCCAGTGAAATTGGGCCTGTTGCACAAACTCCGCGTCCTCAATCTTTCTGCAAACTCTCTGGAAGGAGGAATTCCACCACAGATTGGCCATCTTAAAGCTTTGCGAGTTCTTGATCTCAGCGAGAATGGGATTGAGGGTTTTATTCCAGTTGAGTTGGGCCATCTTAAAGCGTTGCGAATTCTTGATCTCAGCTAGAATGGGATT

Fln Alignment:

GFIJCBT03FN62G___WNALNGPIPVKLGLLHKLRVLNLSANSLEGGIPPQIGHLKALRVLDLSENGIEGFIPVELGHLKALRILDLS*NGI
B8LLA8_______________YNNLSGAIPVDLGSLQKLEDLDLSYNALDNIIPPSLGNCSSLLSLSFSSNRLSGSIPHQLGNLRNIRTLYISNNNI

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain