UniGene Name: sp_v3.0_unigene73876
Length: 208 nt
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>sp_v3.0_unigene73876
G |
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Source | Descriptions | Term | Type | e value | Identity |
---|---|---|---|---|---|
AutoFact | FtsH-like protein (Fragment) n=17 Tax=Triticeae RepID=Q6DVR3_HORSP | - | - | 3.0e-28 | 91% |
FL-Next | tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). | - | - | 0.0 | 89% |
Sma3 | Cell division protease ftsH homolog | - | - | 2.935e-13 | - |
Source | ECs | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | Hydrolases, Acting on peptide bonds (peptide hydrolases), Metalloendopeptidases. | EC:3.4.24.- | - | 0.0 | - |
Sma3 | Microtubule-severing ATPase. | EC:3.6.4.3 | - | 3.399e-20 | - |
Source | Gene names |
---|---|
Sma3 | AAA; AT2G30950; AT4g23940; AT5G42270; At1g06430; At1g07510; At1g50250; At2g26140; At2g29080; At2g30950; At3g02450; At3g02450/F16B3.8; At3g47060; At4g23940; At5g15250; At5g42270; At5g53170; At5g58870; B1040D09.10-1; B1040D09.11; B1151A10.24-2; B1151A10.26- |
Source | GOs | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | intracellular | GO:0005622 | Cellular Component | 0.0 | - |
Sma3 | mitochondrion | GO:0005739 | Cellular Component | 0.0 | - |
Sma3 | mitochondrial inner membrane | GO:0005743 | Cellular Component | 0.0 | - |
Sma3 | chloroplast | GO:0009507 | Cellular Component | 0.0 | - |
Sma3 | chloroplast thylakoid membrane | GO:0009535 | Cellular Component | 0.0 | - |
Sma3 | plastid | GO:0009536 | Cellular Component | 0.0 | - |
Sma3 | thylakoid | GO:0009579 | Cellular Component | 0.0 | - |
Sma3 | chloroplast envelope | GO:0009941 | Cellular Component | 0.0 | - |
Sma3 | membrane | GO:0016020 | Cellular Component | 0.0 | - |
Sma3 | integral to membrane | GO:0016021 | Cellular Component | 0.0 | - |
Sma3 | mitochondrial membrane | GO:0031966 | Cellular Component | 0.0 | - |
Sma3 | thylakoid lumen | GO:0031977 | Cellular Component | 0.0 | - |
Sma3 | ATP-dependent peptidase activity | GO:0004176 | Molecular Function | 0.0 | - |
Sma3 | metalloendopeptidase activity | GO:0004222 | Molecular Function | 0.0 | - |
Sma3 | serine-type endopeptidase activity | GO:0004252 | Molecular Function | 0.0 | - |
Sma3 | protein binding | GO:0005515 | Molecular Function | 0.0 | - |
Sma3 | ATP binding | GO:0005524 | Molecular Function | 0.0 | - |
Sma3 | zinc ion binding | GO:0008270 | Molecular Function | 0.0 | - |
Sma3 | nucleoside-triphosphatase activity | GO:0017111 | Molecular Function | 0.0 | - |
Sma3 | proteolysis | GO:0006508 | Biological Process | 0.0 | - |
Sma3 | cell cycle | GO:0007049 | Biological Process | 0.0 | - |
Sma3 | multicellular organismal development | GO:0007275 | Biological Process | 0.0 | - |
Sma3 | response to heat | GO:0009408 | Biological Process | 0.0 | - |
Sma3 | photosystem II repair | GO:0010206 | Biological Process | 0.0 | - |
Sma3 | PSII associated light-harvesting complex II catabolic process | GO:0010304 | Biological Process | 0.0 | - |
Sma3 | protein catabolic process | GO:0030163 | Biological Process | 0.0 | - |
Sma3 | regulation of apoptotic process | GO:0042981 | Biological Process | 0.0 | - |
Sma3 | cell division | GO:0051301 | Biological Process | 0.0 | - |
Source | InterPros | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | Ribosomal protein S7 | IPR000235 | - | 0.0 | - |
Sma3 | RNA recognition motif domain | IPR000504 | - | 0.0 | - |
Sma3 | Peptidase M41 | IPR000642 | - | 0.0 | - |
Sma3 | Caspase Recruitment | IPR001315 | - | 0.0 | - |
Sma3 | IPR001984 | - | 0.0 | - | |
Sma3 | Pentatricopeptide repeat | IPR002885 | - | 0.0 | - |
Sma3 | AAA+ ATPase domain | IPR003593 | - | 0.0 | - |
Sma3 | ATPase, AAA-type, core | IPR003959 | - | 0.0 | - |
Sma3 | ATPase, AAA-type, conserved site | IPR003960 | - | 0.0 | - |
Sma3 | Sugar transporter, conserved site | IPR005829 | - | 0.0 | - |
Sma3 | Peptidase, FtsH | IPR005936 | - | 0.0 | - |
Sma3 | Twin-arginine translocation pathway, signal sequence | IPR006311 | - | 0.0 | - |
Sma3 | Peptidase M41, FtsH extracellular | IPR011546 | - | 0.0 | - |
Sma3 | Nucleotide-binding, alpha-beta plait | IPR012677 | - | 0.0 | - |
Sma3 | Polysaccharide lyase 8, N-terminal alpha-helical | IPR012970 | - | 0.0 | - |
Sma3 | EGF-like region, conserved site | IPR013032 | - | 0.0 | - |
Sma3 | IPR017909 | - | 0.0 | - | |
Sma3 | Peptidase S26A, signal peptidase I, serine active site | IPR019756 | - | 0.0 | - |
Source | Species | ID | Description | e value | Identity |
---|---|---|---|---|---|
ATG | Arabidoptis thaliana | AT1G06430.1 | FTSH8 FTSH protease 8 chr1:1960214-1962525 REVERSE LENGTH=685 | 1.0e-35 | 91% |
RefSeq | Arabidopsis thaliana | NP_563766.3 | cell division protease ftsH-8 [Arabidopsis thaliana] | 1.0e-35 | 91% |
RefSeq | Populus trichocarpa | XP_002332995.1 | predicted protein [Populus trichocarpa] | 3.0e-36 | 91% |
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Fln status: Internal
Fln database: coniferopsida.fasta
Fln subject: C0PQ75
Fln msg: Distance to subject end: 395 aas, your sequence is shorter than subject: 68 - 695
Fln protein:
I
Protein Length:
69
Fln nts:
G
Fln Alignment:
GFIJCBT03GR0KH___ITFDDVAGVDEAKQDFKEIVEFLKKPEKFTAVGARIPKGALLVGPPGTGKTLLAKAIAGEAGVPLFSI
C0PQ75_______________VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain