SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene73758

Length: 326 nt

UniGene Fasta

>sp_v3.0_unigene73758
AAAAAGGTCATATCATCATGAATCATTCTATCATTGACCCATATCAGGGAGACTTCCCTGAAGTTATAGAAGAGTTCCTGGAACAAGGGGTAGCCAGGTGCATTGCATTCAATAGCAGGGGCACACTTCTTGCTGCTGGCTGTACAGACGGAACTTGTGTTATATGGGACTTTGAAACCAGAGGAGTTGCTAAGGAACTTCGTGACAAGGACTATGGTGCAGCTATTACAAGCGTGTGTTGGTCCAGGCGTGGTTGTCAATTACTGACATCTGCTTCAGCAACATCCCAGAGTGTCAAAGATTGCACGTATTACACTCCAGCAGAC

Ace file of the UniGene sp_v3.0_unigene73758

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nucleotide binding protein, putative n=1 Tax=Ricinus communis RepID=B9SA71_RICCO	-	-	7.0e-34	73%
FL-Next	tr=Nucleotide binding protein, putative; Ricinus communis (Castor bean).	-	-	0.0	73%
Sma3	Retinoblastoma-binding protein-like	-	-	1.736e-09	-

Source	Gene names
Sma3	At3g21060; GSVIVT00019063001; LOC_Os03g10990; MtrDRAFT_AC147431g31v2; OSJNBa0014O06.12; Os03g0207900; OsI_10465; OsJ_09856; PHYPADRAFT_57600; POPTRDRAFT_752963; POPTRDRAFT_783647; RCOM_0862780; SWDA1501; VITISV_003927;

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	C-type lectin, conserved site	IPR018378	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G21060.1	Transducin/WD40 repeat-like superfamily protein chr3:7377822-7379942 FORWARD LENGTH=547	1.0e-38	68%
RefSeq	Arabidopsis thaliana	NP_188743.3	transducin/WD40 domain-containing protein [Arabidopsis thaliana]	1.0e-38	68%
RefSeq	Populus trichocarpa	XP_002300221.1	predicted protein [Populus trichocarpa]	1.99993e-41	71%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: B9SA71

Fln msg: Distance to subject end: 448 aas, your sequence is shorter than subject: 103 - 551

Fln protein: MNHSIIDPYQGDFPEVIEEFLEQGVARCIAFNSRGTLLAAGCTDGTCVIWDFETRGVAKELRDKDYGAAITSVCWSRRGCQLLTSASATSQSVKDCTYYTPAD

Protein Length: 104

Fln nts: AAAAAGGTCATATCATC_-_ATGAATCATTCTATCATTGACCCATATCAGGGAGACTTCCCTGAAGTTATAGAAGAGTTCCTGGAACAAGGGGTAGCCAGGTGCATTGCATTCAATAGCAGGGGCACACTTCTTGCTGCTGGCTGTACAGACGGAACTTGTGTTATATGGGACTTTGAAACCAGAGGAGTTGCTAAGGAACTTCGTGACAAGGACTATGGTGCAGCTATTACAAGCGTGTGTTGGTCCAGGCGTGGTTGTCAATTACTGACATCTGCTTCAGCAACATCCCAGAGTGTCAAAGATTGCACGTATTACACTCCAGCAGAC

Fln Alignment:

GFIJCBT03GT4X1___MNHSIIDPYQGDFPEVIEEFLEQGVARCIAFNSRGTLLAAGCTDGTCVIWDFETRGVAKELRDKDYGAAITSVCWSRRGCQLLTSASATSQSVKD
B9SA71_______________MNASIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKDCIAAITSVCWSKYGHRILVSAADKSLTLWD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain