SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene73739

Length: 433 nt

UniGene Fasta

>sp_v3.0_unigene73739
AGGAATTAGAGAGTCGGAGCTGCAACTTTGGTGGGCTAATTTTATGGCGTTGAGAACCTGGTGTGAATATTCTGCTGCTGAGGATGAGGAGGAACCCAAGCCGAGGAAGGGGCCCTGGACTGTTCAAGAGGACATACAACTTATTGGGTATATAAGTTCGCATGGAGAAGGAGGGTGGCCCTTTCTTGCCAAAGCAGCGGGCCTAAACAGAACAGGCAAGAGCTGTAGGCTTAGGTGGATCAACTACCTCCGACCTGATCTCAAGCGTAGCAAGATCACTCCTCAAGAAGAACGTTTGATCATTAAACTCCATCGCCGTTGGGGGAACAAGTGGTCTAGCATTGCGCAGAATTTACCGGGGAGAACGGACAACGAAATCAAGAATTACTGGAGAACTCGTATCAAGAAAAGACTAGAATCTAGAATTCGCAAG

Ace file of the UniGene sp_v3.0_unigene73739

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MYB transcription factor MYB181 n=2 Tax=Glycine max RepID=Q0PJJ6_SOYBN	-	-	3.9937e-43	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Sma3	MYB transcription factor	-	-	1.347e-38	-

Source	Gene names
Sma3	AIM1; AT4g13480; At1g18570; At1g18570/F25I16_4; At1g22640; At1g25340; At1g35515; At1g48000; At1g68320; At2g16720; At2g47190; At3g01530; At3g01530/F4P13_8; At3g02940; At3g06490; At3g24310; At3g27810; At3g30210; At3g46130; At4g13480; At4g38620; At5g16770; A

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	calmodulin binding	GO:0005516	Molecular Function	-
Sma3	transcription activator activity	GO:0016563	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	red, far-red light phototransduction	GO:0009585	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	cold acclimation	GO:0009631	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	response to ethylene stimulus	GO:0009723	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	response to gibberellin stimulus	GO:0009739	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	indole glucosinolate biosynthetic process	GO:0009759	Biological Process	-
Sma3	cinnamic acid biosynthetic process	GO:0009800	Biological Process	-
Sma3	negative regulation of metabolic process	GO:0009892	Biological Process	-
Sma3	red or far-red light signaling pathway	GO:0010017	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-
Sma3	response to UV-B	GO:0010224	Biological Process	-
Sma3		GO:0016481	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	stamen development	GO:0048443	Biological Process	-
Sma3	flavonol biosynthetic process	GO:0051555	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Phosphoglycerate/bisphosphoglycerate mutase, active site	IPR001345	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	Myb-like domain	IPR017877	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G48000.1	MYB112, AtMYB112 myb domain protein 112 chr1:17704269-17706377 REVERSE LENGTH=243	64%
RefSeq	Arabidopsis thaliana	NP_564519.1	myb domain protein 112 [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002323803.1	predicted protein [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLD7

Fln msg: Distance to subject end: 170 aas, your sequence is shorter than subject: 130 - 295

Fln protein: MALRTWCEYSAAEDEEEPKPRKGPWTVQEDIQLIGYISSHGEGGWPFLAKAAGLNRTGKSCRLRWINYLRPDLKRSKITPQEERLIIKLHRRWGNKWSSIAQNLPGRTDNEIKNYWRTRIKKRLESRIRK

Protein Length: 131

Fln nts: AGGAATTAGAGAGTCGGAGCTGCAACTTTGGTGGGCTAATTTT_-_ATGGCGTTGAGAACCTGGTGTGAATATTCTGCTGCTGAGGATGAGGAGGAACCCAAGCCGAGGAAGGGGCCCTGGACTGTTCAAGAGGACATACAACTTATTGGGTATATAAGTTCGCATGGAGAAGGAGGGTGGCCCTTTCTTGCCAAAGCAGCGGGCCTAAACAGAACAGGCAAGAGCTGTAGGCTTAGGTGGATCAACTACCTCCGACCTGATCTCAAGCGTAGCAAGATCACTCCTCAAGAAGAACGTTTGATCATTAAACTCCATCGCCGTTGGGGGAACAAGTGGTCTAGCATTGCGCAGAATTTACCGGGGAGAACGGACAACGAAATCAAGAATTACTGGAGAACTCGTATCAAGAAAAGACTAGAATCTAGAATTCGCAAG

Fln Alignment:

GFIJCBT03FXQD4___EEEPKPRKGPWTVQEDIQLIGYISSHGEGGWPFLAKAAGLNRTGKSCRLRWINYLRPDLKRSKITPQEERLIIKLHRRWGNKWSSIAQNLPGRTDNEIKNYWRTRIKKRLES
B8LLD7_______________ERAGKLKKGPWTYEEDIRLLRYITIHGPGRWSALAKASGLQRCGKSCRLRWVNYLRPDLKRGSITPEEESIILDLHARWGNRWSLIAEKMPGRTDNEIKNYWRSHLKKKLST

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain