SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene73731

Length: 530 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene73731
GTCAAGATCTTAAGCATTTCGTAGCAAAGAGCTTATCAGTTGCGTTTTTCTGACAAATCCATTCCGATTTTCTAAGTGTAGCTCCATTTTCTCGGCGAAAACAATCGTTTGTCCGTTTCCTTCTCGAAAACAATTGTTTTGCTGCGACTCTGGACAAAAAGAGAGCCATTTTGGACAAACCAGAAGGACGGAGGGGGTTTTCTCTAGTTTTCTCGTGCAGCAATGGGGGGATTACGGCGATGCCTTTATGCGCAACAAAGATGCGGCGGTTCAAGCGCGGACGAAGGCCCAAAATCGAGCCACAGTTCTGCAGTTAAAATTGATAGAACGTTCTCATTCACATGATTATGAACGGGAGAGGTGAACAACTTCATAAAGGTTTTTAACAGTAGGTAAAAAGGGTGAGAACATATTATTCTTTTACAGCATTTTATATTTGCTACAAACAATGAAAATACAACAAGACTTCATTTTAAAGCATTTAATTCCGGATTTGAAACGTCCAGCAAATGCATTTAAAATCTCCGTTT

Ace file of the UniGene sp_v3.0_unigene73731 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	Isoform Short of U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana GN=RNU1	-	-	0.0	70%

Source	Gene names
Sma3	At3g50670; GSVIVT00024956001; POPTRDRAFT_219158; RCOM_0536950; RCOM_1177140; RNU1; T3A5.50; U1-70K;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	ribonucleoprotein complex	GO:0030529	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	nuclear mRNA splicing, via spliceosome	GO:0000398	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q42404-2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 102 aas, your sequence is shorter than subject: 39 - 204

Fln protein: MRNKDAAVQARTKAQNRATVLQLKLIERSHSHDYERER*

Protein Length: 40

Fln nts: GTCAAGATCTTAAGCATTTCGTAGCAAAGAGCTTATCAGTTGCGTTTTTCTGACAAATCCATTCCGATTTTCTAAGTGTAGCTCCATTTTCTCGGCGAAAACAATCGTTTGTCCGTTTCCTTCTCGAAAACAATTGTTTTGCTGCGACTCTGGACAAAAAGAGAGCCATTTTGGACAAACCAGAAGGACGGAGGGGGTTTTCTCTAGTTTTCTCGTGCAGCAATGGGGGGATTACGGCGATGCCTTT_-_ATGCGCAACAAAGATGCGGCGGTTCAAGCGCGGACGAAGGCCCAAAATCGAGCCACAGTTCTGCAGTTAAAATTGATAGAACGTTCTCATTCACATGATTATGAACGGGAGAGGTGAACAACTTCATAAAGGTTTTTAACAGTAGGTAAAAAGGGTGAGAACATATTATTCTTTTACAGCATTTTATATTTGCTACAAACAATGAAAATACAACAAGACTTCATTTTAAAGCATTTAATTCCGGATTTGAAACGTCCAGCAAATGCATTTAAAATCTCCGTTT

Fln Alignment:

GFIJCBT03GOCJB___GDYGDAFMRNKDAAVQARTKAQNRATVLQLKLIERSH
Q42404-2_____________GDSGDPFLRNPNAAVQARAKVQNRANVLQLKLMGQSH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain