SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene73697

Length: 413 nt

UniGene Fasta

>sp_v3.0_unigene73697
GAAAAGATCGAGGAGGGTCAGCTCGGTGTGCGAATCGCAGCGTCGAGAAAGCTCGAGCACGAGCTCGGCATTCCACAAAGCCAGACGCCGATCGACGAGTTCCAGTATTTGACCAAGATCCATTATCTTGCACCGTCGAATGGCATGTGGGGCGAGCATGAAGTCGACTACATCTTATTCCTGACCGCGGATGTTACCGTGACGCCAAATAATAACGAGATCAAGGATCACAAATACGTGCAAGGCCGAGCTACAGGCGATGTTCGATGACCCATCAAACTCGTTTACACCTTGGTTCAAGCTGATTGCACGCGACTTTTTGTTCGGGTGGTGGGATACCCTGTTGGCGCGCAAGGGCCACGATGGTCGTGTCTATGCCAAGACTTTGACAGGTGTAGCTGATGGATCAAAGG

Ace file of the UniGene sp_v3.0_unigene73697

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	isopentenyl-diphosphate Delta-isomerase [Coprinopsis cinerea okayama7#130] gb\|EAU93097.1\| isopentenyl-diphosphate Delta-isomerase [Coprinopsis cinerea okayama7#130]	-	-	0.0	80%
FL-Next	tr=Isopentenyl diphosphate isomerase; Pinus taeda (Loblolly pine).	-	-	0.0	56%
Sma3	Isopentenyl pyrophosphate:dimethyllallyl pyrophosphate isomerase	-	-	3.983e-24	-

Source	ECs	Term	Type	e value	Identity
Sma3	Isopentenyl-diphosphate Delta-isomerase.	EC:5.3.3.2	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Terpenoid backbone biosynthesis	00900	%
Sma3	Biosynthesis of terpenoids and steroids	01062	%
Sma3	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	%
Sma3	Biosynthesis of plant hormones	01070	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	At3g02780; At5g16440; EUIPPI; F13E7.28; GSVIVT00025071001; GenIPI1; GenIPI2; HbIPI I; HbIPI II; IDI; IPI; IPI1; IPI2; IPP1; IPP2; IPPI; Ipi; MQK4.17; OJ1612_A04.101; Os05g0413400; Os07g0546000; OsI_19961; OsI_26387; OsJ_18544; P.s.IPPiso; P0006G05.104; P0

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	isopentenyl-diphosphate delta-isomerase activity	GO:0004452	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	isoprenoid biosynthetic process	GO:0008299	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	photosynthesis	GO:0015979	Biological Process	-
Sma3	chlorophyll biosynthetic process	GO:0015995	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	NUDIX hydrolase domain	IPR000086	-	0.0	-
Sma3	Isopentenyl-diphosphate delta-isomerase, type 1	IPR011876	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G16440.1	IPP1 isopentenyl diphosphate isomerase 1 chr5:5371765-5373575 FORWARD LENGTH=291	6.0e-23	56%
RefSeq	Arabidopsis thaliana	NP_197148.3	Isopentenyl-diphosphate Delta-isomerase I [Arabidopsis thaliana]	8.0e-23	56%
RefSeq	Populus trichocarpa	XP_002325469.1	predicted protein [Populus trichocarpa]	1.0e-24	57%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: C8CS12

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 48 aas, putative chimeric sequence, your sequence is shorter than subject: 90 - 312

Fln protein: EKIEEGQLGVRIAASRKLEHELGIPQSQTPIDEFQYLTKIHYLAPSNGMWGEHEVDYILFLTADVTVTPNNNEIKDHKYVQGRATGDVR*

Protein Length: 91

Fln nts: GAAAAGATCGAGGAGGGTCAGCTCGGTGTGCGAATCGCAGCGTCGAGAAAGCTCGAGCACGAGCTCGGCATTCCACAAAGCCAGACGCCGATCGACGAGTTCCAGTATTTGACCAAGATCCATTATCTTGCACCGTCGAATGGCATGTGGGGCGAGCATGAAGTCGACTACATCTTATTCCTGACCGCGGATGTTACCGTGACGCCAAATAATAACGAGATCAAGGATCACAAATACGTGCAAGGCCGAGCTACAGGCGATGTTCGATGA___CCCATCAAACTCGTTTACACCTTGGTTCAAGCTGATTGCACGCGACTTTTTGTTCGGGTGGTGGGATACCCTGTTGGCGCGCAAGGGCCACGATGGTCGTGTCTATGCCAAGACTTTGACAGGTGTAGCTGATGGATCAAAGG

Fln Alignment:

GFIJCBT03F9SPH___EKIEEGQLGVRIAASRKLEHELGIPQSQTPIDEFQYLTKIHYLAPSNGMWGEHEVDYILFLTADVTVTPNNNEIKDHKYV
C8CS12_______________ELIEENNLGVRNAAQRKLYDELGIAAEDVPVDQFVPLGRILYKAPSDGKWGEHELDYLVFIVRDVAVHPNPEEVADVKYV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain