SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene73694

Length: 446 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene73694
TCTAGAGTTTGATCTGGAAGGATCCATCTCGAGGAAGTATAATAGAAGCCCGGGGTACTACGATGGGAGATACTGGGTGATGTGGAAGTTGCCAAGTGCAGTGCATTTCCTTCATCGTCCACAAGCCCGAATAGTCTTAGGTTTAATCAATTTGTGCGCGTCTTCTGTTCTTCTCGTTCATGTCACCTCCATGATTTGGTAGGGTGCACCTGAGGCGTTGAGCCGTGAGTAAGTTTCAGGAGAAGCTGCTATGTTACTAGTAGATTAATTAATTATTAGTGGTGAGCTAATGACTCTTCAAATAATTTGAAGTCGTGTGGAACACTTGTTTCTGCATGTGGAAGCCACATTTTGAGGACCAATTGTTTTGTGATTCTAGTGGGCAATTGATGTTTATGTATGTGGCGCGTTTAATAATAAGGTAACACCCATTGGTGGGGTTAACT

Ace file of the UniGene sp_v3.0_unigene73694 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribulose bisphosphate carboxylase small chain, chloroplastic n=1 Tax=Pinus thunbergii RepID=RBS_PINTH	-	-	3.0e-15	100%
FL-Next	sp=Ribulose bisphosphate carboxylase small chain, chloroplastic; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana).	-	-	0.0	100%
Sma3	Ribulose bisphosphate carboxylase small chain	-	-	2.231e-24	-

Source	Gene names
Sma3	RBCS; RBCS1; RBCS2; RBCS3; RBCS4; RBCS5; RBSS; rbc; rbcS; rbcs1; rbsc1;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast ribulose bisphosphate carboxylase complex	GO:0009573	Cellular Component	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	ribulose-bisphosphate carboxylase activity	GO:0016984	Molecular Function	-
Sma3	photorespiration	GO:0009853	Biological Process	-
Sma3	carbon fixation	GO:0015977	Biological Process	-
Sma3	reductive pentose-phosphate cycle	GO:0019253	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribulose bisphosphate carboxylase small chain, domain	IPR000894	-	0.0	-
Sma3	Proteinase inhibitor I3, Kunitz legume	IPR002160	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: P10053

Fln msg: Warning!, your query overlaps and the subject is separated, your sequence is shorter than subject: 45 - 171

Fln protein: LEFDLEGSISRKYNRSPGYYDGRYWVMWKLxxVQCISFIVHKPE*

Protein Length: 46

Fln nts: TCTAGAGTTTGATCTGGAAGGATCCATCTCGAGGAAGTATAATAGAAGCCCGGGGTACTACGATGGGAGATACTGGGTGATGTGGAAGTTGxxxxxxGTGCAGTGCATTTCCTTCATCGTCCACAAGCCCGAATAGTCTTAGGTTTAATCAATTTGTGCGCGTCTTCTGTTCTTCTCGTTCATGTCACCTCCATGATTTGGTAGGGTGCACCTGAGGCGTTGAGCCGTGAGTAAGTTTCAGGAGAAGCTGCTATGTTACTAGTAGATTAATTAATTATTAGTGGTGAGCTAATGACTCTTCAAATAATTTGAAGTCGTGTGGAACACTTGTTTCTGCATGTGGAAGCCACATTTTGAGGACCAATTGTTTTGTGATTCTAGTGGGCAATTGATGTTTATGTATGTGGCGCGTTTAATAATAAGGTAACACCCATTGGTGGGGTTAACT

Fln Alignment:

GFIJCBT03F4W6U___LEFDLEGSISRKYNRSPGYYDGRYWVMWKLPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQVQCISFIVHKPE
P10053_______________LEFDLEGSISRKYNRSPGYYDGRYWVMWKLPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQVQCISFIVHKPE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain