SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene73548

Length: 219 nt

UniGene Fasta

>sp_v3.0_unigene73548
GCCGGATTTGCAGCTCCGGGAGGAGCTTAGAATTTTAGTCGCAGAGAAGATAATACCAGCCTATCGGTACTTCCTGGGAAGATTCAGAAAGTCTTTGGGAAGTGGGAGCCACTCCCAGATATATATTAAGTACACGCCTGAAGACCTGGAAGCTCATCTCCTAGATCTGTTTCACGGAAATTCATCATCCGTGAGTTCATCATCAGGGAGATCCTTAAA

Ace file of the UniGene sp_v3.0_unigene73548

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Exocyst complex component 7 n=4 Tax=Arabidopsis RepID=F4K8Y6_ARATH	-	-	2.0e-14	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Sma3	Gb\|AAD25781.1	-	-	3.564e-09	-

Source	Gene names
Sma3	At1g72470; At3g14090; At5g03540; At5g50380; B1144B06.20; B1793G04.19; F12E4_320; GSVIVT00017936001; GSVIVT00034051001; OJ1344_B01.18; OJ1485_B09.6; OSJNBa0072D21.9; Os01g0921400; Os04g0382200; Os08g0455700; Os09g0439600; OsI_04970; OsI_15625; OsI_29462; O

Source	GOs	Term	Type	Identity
Sma3	exocyst	GO:0000145	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	exocytosis	GO:0006887	Biological Process	-
Sma3	lateral root morphogenesis	GO:0010102	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Exo70 exocyst complex subunit	IPR004140	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G50380.1	ATEXO70F1, EXO70F1 exocyst subunit exo70 family protein F1 chr5:20516382-20518433 REVERSE LENGTH=683	2.0e-19	65%
RefSeq	Arabidopsis thaliana	NP_199849.2	exocyst complex component 7 [Arabidopsis thaliana]	3.0e-19	65%
RefSeq	Populus trichocarpa	XP_002331201.1	predicted protein [Populus trichocarpa]	1.0e-18	64%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P1J4

Fln msg: STOP codon was not found. Distance to subject end: 6 aas, your sequence is shorter than subject: 72 - 235

Fln protein: PDLQLREELRILVAEKIIPAYRYFLGRFRKSLGSGSHSQIYIKYTPEDLEAHLLDLFHGNSSSVSSSSGRSL

Protein Length: 73

Fln nts: GCCGGATTTGCAGCTCCGGGAGGAGCTTAGAATTTTAGTCGCAGAGAAGATAATACCAGCCTATCGGTACTTCCTGGGAAGATTCAGAAAGTCTTTGGGAAGTGGGAGCCACTCCCAGATATATATTAAGTACACGCCTGAAGACCTGGAAGCTCATCTCCTAGATCTGTTTCACGGAAATTCATCATCCGTGAGTTCATCATCAGGGAGATCCTTAAA

Fln Alignment:

GFIJCBT03HCBB4___PDLQLREELRILVAEKIIPAYRYFLGRFRKSLGSGSHSQIYIKYTPEDLEAHLLDLFHGN
A9P1J4_______________PDLQLEEELRISIAEQMIPAYRSFLGRLRKYLKSGSQSNMYIKYTPEDLETHLLDLFHSN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain