SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene73511

Length: 425 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene73511
TTGAAGAGATTATCAAAGATTGGAATTCTGAGTTACAAGAACGTACTACAAAATTCCGAAAGCAAGCTGAGGCTTTAGCAGAATGGGATCGGAGGATCTTACGGAATCGAAATGTACTTATAAAGCTGGAGGTAGAAAAGGCCTTACAAAGCATGGAAGAAGAGGCTGAGAGGATATACAAGGAGGAGCGGCCATCCATTACTGAAGATGAAGCTGCATCAGTTAGAGATTTAATGTATGAACAGGCAGAGTATATTGAAAGAGAAATGGAGCAGATGGGAGAACAAATTAAGCGAATAATAGAGACTGTAAATGCAAATCAGGGTGGGGACTTGGATAACTCTGATGGGATCAGTCCGCTGGACATTGTAGTAAGAATTTTGAACAATCAATTGAATTCCCTGGTTTGGATTGATGAAAAGGCT

Ace file of the UniGene sp_v3.0_unigene73511 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	structural constituent of nuclear pore [Arabidopsis thaliana] gb\|AAM91808.1\| unknown protein [Arabidopsis thaliana] gb\|AEC10495.1\| structural constituent of nuclear pore [Arabidopsis thaliana]	-	-	2.94273e-44	56%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	65%

Source	Gene names
Sma3	At2g45005; GSVIVT00019147001; Os01g0856600; OsI_04485; OsJ_04120; PHYPADRAFT_166175; POPTRDRAFT_781293; RCOM_1609340; VITISV_016403;

Source	GOs	Term	Type	e value	Identity
Sma3	nuclear pore	GO:0005643	Cellular Component	0.0	-
Sma3	structural constituent of nuclear pore	GO:0017056	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Phosphopantetheine attachment site	IPR006162	-	0.0	-
Sma3	Nucleoporin, NSP1-like, C-terminal	IPR007758	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G45000.1	EMB2766 structural constituent of nuclear pore chr2:18564156-18567632 FORWARD LENGTH=739	61%
RefSeq	Arabidopsis thaliana	NP_850429.1	structural constituent of nuclear pore [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002327002.1	predicted protein [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9MV05

Fln msg: Distance to subject end: 26 aas, your sequence is shorter than subject: 141 - 241

Fln protein: EEIIKDWNSELQERTTKFRKQAEALAEWDRRILRNRNVLIKLEVEKALQSMEEEAERIYKEERPSITEDEAASVRDLMYEQAEYIEREMEQMGEQIKRIIETVNANQGGDLDNSDGISPLDIVVRILNNQLNSLVWIDEKA

Protein Length: 142

Fln nts: TTGAAGAGATTATCAAAGATTGGAATTCTGAGTTACAAGAACGTACTACAAAATTCCGAAAGCAAGCTGAGGCTTTAGCAGAATGGGATCGGAGGATCTTACGGAATCGAAATGTACTTATAAAGCTGGAGGTAGAAAAGGCCTTACAAAGCATGGAAGAAGAGGCTGAGAGGATATACAAGGAGGAGCGGCCATCCATTACTGAAGATGAAGCTGCATCAGTTAGAGATTTAATGTATGAACAGGCAGAGTATATTGAAAGAGAAATGGAGCAGATGGGAGAACAAATTAAGCGAATAATAGAGACTGTAAATGCAAATCAGGGTGGGGACTTGGATAACTCTGATGGGATCAGTCCGCTGGACATTGTAGTAAGAATTTTGAACAATCAATTGAATTCCCTGGTTTGGATTGATGAAAAGGCT

Fln Alignment:

GFIJCBT03GLRHU___EEIIKDWNSELQERTTKFRKQAEALAEWDRRILRNRNVLIKLEVE--------------------------KALQSMXXXXXXXXXXERPSITEDEAASVRDLMYEQAEYIEREMEQMGEQIKRIIETVNANQGGDLDNSDGISPLDIVVRILNNQLNSLVWIDEKA
B9MV05_______________EEIIKEWNSELQERTGKFRKQATAIAEWDKRILQNRDVLLRLEIEVAKVVETQANLERKLELIETHQQEVDKALQSIEEEAERIYKDERGSLLDDEAASTRDAMYEQAEFIEREMEQMTEQIKSVIQTVNANQGGELDAIDGMTPLDMVVRILNNQLSSLMWIDEKA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain