SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene73491

Length: 216 nt

UniGene Fasta

>sp_v3.0_unigene73491
CGCCGTCTTGAACGAATGGTGGAGTCTTGCCCCACCTTCTCTGGGTGGACAACAGCAACTGCCACACCGCCATAACGTCAGGGCAGGGCTTCGGTGGCACAATCAAAGCCATCAACAGCCAGGAATGCAACGGCGGAAACAGTGGGGAAGTGAATAGCAGAGTGAACTGGCTACAGATATTCTTGTAGTAGTTCACTCTGCTATTCACTTCCCCAC

Ace file of the UniGene sp_v3.0_unigene73491

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Class IV chitinase Ab n=3 Tax=Pinus monticola RepID=Q596H7_PINMO	-	-	2.0e-16	90%
FL-Next	tr=Class IV chitinase A; Pinus monticola (Western white pine) (Strobus monticola).	-	-	0.0	90%
Sma3	Putative class IV chitinase	-	-	1.86e-08	-

Source	Gene names
Sma3	Ch4A; Chi4; chi; cjp-4;

Source	GOs	Term	Type	Identity
Sma3	chitinase activity	GO:0004568	Molecular Function	-
Sma3	chitin binding	GO:0008061	Molecular Function	-
Sma3	chitin catabolic process	GO:0006032	Biological Process	-
Sma3	cell wall macromolecule catabolic process	GO:0016998	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Glycoside hydrolase, family 19, catalytic	IPR000726	-	-
Sma3	Chitin-binding, type 1	IPR001002	-	-
Sma3	Glycoside hydrolase, family 19	IPR016283	-	-
Sma3	Chitin-binding, type 1, conserved site	IPR018371	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q596H9

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 62 - 273

Fln protein: PS*TNGGVLPHLLWVDNSNCHTAITSGQGFGGTIKAINSQECNGGNSGEVNSRVNWLQIFL*

Protein Length: 63

Fln nts: CGCCGTCTTGAACGAATGGTGGAGTCTTGCCCCACCTTCTCTGGGTGGACAACAGCAACTGCCACACCGCCATAACGTCAGGGCAGGGCTTCGGTGGCACAATCAAAGCCATCAACAGCCAGGAATGCAACGGCGGAAACAGTGGGGAAGTGAATAGCAGAGTGAACTGGCTACAGATATTCTTGTAG___TAGTTCACTCTGCTATTCACTTCCCCAC

Fln Alignment:

GFIJCBT03GFPR7___WVDNSNCHTAITSGQGFGGTIKAINSQECNGGNSGEVNSRVNW
Q596H9_______________WMKNSNCHSAITSGQGFGGTIKAINSQECNGGNSGEVNSRVNY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain