SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene73469

Length: 379 nt

UniGene Fasta

>sp_v3.0_unigene73469
GAGTGAAGGAGTACCTGAAGCCGTATGGTGAAATAGAACGAGTTGTGCTGGCTCGTAACATGCCCACTGCCAAGCGAAGGGATTTTGGATTTGTGAATTTTACTAGTCACGAGGCAGCCATGTCATGCATCGAAGCTTTAAACAACACTATGTTGATTGATGGAGAGACAAAGTTAAAAGTCAGAGTTAGACTTGCCAATCCACTTCCAAAGAGCCAAGCAGTGAAAGGAGGAGGGCACACTTCGCAGATCTACGCCATTAGGCAAAGCATTGCGAAAGCACTGCTTGCCTTTTACCAGAAGTACGTGGACGAGCAGTCGAAGAAGGAGATAAAGGATATTCTCGTCAGGTATGACAGGACTTCTGGAAACGAGCACGA

Ace file of the UniGene sp_v3.0_unigene73469

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[J] COG0103 Ribosomal protein S9	-	-	3.0e-13	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Sma3	40S ribosomal protein S16	-	-	6.53e-32	-

Source	Gene names
Sma3	At2g09990; At2g44710; At2g44720; At3g04230; At5g18380; CHLREDRAFT_195606; F20L16.100; F7B19.13; GSVIVT00019044001; GSVIVT00019940001; GSVIVT00036621001; GSVIVT00036809001; MICPUCDRAFT_62402; MICPUN_93705; OsI_033743; OsI_036072; Ot05g03930; PHYPADRAFT_140

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-
Sma3	ribonucleoprotein complex	GO:0030529	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Ribosomal protein S9	IPR000754	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G18380.1	Ribosomal protein S5 domain 2-like superfamily protein chr5:6090253-6090693 REVERSE LENGTH=146	2.0e-23	91%
RefSeq	Arabidopsis thaliana	NP_001078601.1	40S ribosomal protein S16-3 [Arabidopsis thaliana]	3.0e-23	91%
RefSeq	Populus trichocarpa	XP_002310851.1	predicted protein, partial [Populus trichocarpa]	9.0e-25	62%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NTC7

Fln msg: Distance to subject end: 22 aas, your sequence is shorter than subject: 106 - 143

Fln protein: MPTAKRRDFGFVNFTSHEAAMSCIEALNNTMLIDGETKLKVRVRLANPLPKSQAVKGGGHTSQIYAIRQSIAKALLAFYQKYVDEQSKKEIKDILVRYDRTSGNEH

Protein Length: 107

Fln nts: GAGTGAAGGAGTACCTGAAGCCGTATGGTGAAATAGAACGAGTTGTGCTGGCTCGTAAC_-_ATGCCCACTGCCAAGCGAAGGGATTTTGGATTTGTGAATTTTACTAGTCACGAGGCAGCCATGTCATGCATCGAAGCTTTAAACAACACTATGTTGATTGATGGAGAGACAAAGTTAAAAGTCAGAGTTAGACTTGCCAATCCACTTCCAAAGAGCCAAGCAGTGAAAGGAGGAGGGCACACTTCGCAGATCTACGCCATTAGGCAAAGCATTGCGAAAGCACTGCTTGCCTTTTACCAGAAGTACGTGGACGAGCAGTCGAAGAAGGAGATAAAGGATATTCTCGTCAGGTATGACAGGACTTCTGGAAACGAGCACGA

Fln Alignment:

GFIJCBT03G6OQH___VKGGGHTSQIYAIRQSIAKALLAFYQKYVDEQSKKEIKDILVRYDRT
A9NTC7_______________VKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain