SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene73439

Length: 156 nt

UniGene Fasta

>sp_v3.0_unigene73439
CGTCGTGACCTTGGCTGTCACTCATTCAGGTAGTGCTCCAGAACTGATTACGATTGGTGCAGACAAGACACTTGCCATTTGGGATACTATATCATTCAAGGAAGTCAAACGATTAAGCCAGTTGCAAAGCTCACTCCTCATAGTGTTGCATCTTGG

Ace file of the UniGene sp_v3.0_unigene73439

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	85%

Source	Gene names
Sma3	At5g24710; GSVIVT00033606001; MtrDRAFT_AC149038g7v2; OSJNBb0006H05.18-1; Os01g0653800; OsI_03104; OsJ_02855; POPTRDRAFT_819144; RCOM_0888260; VITISV_009629;

Source	GOs	Term	Type	e value	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G24710.1	Transducin/WD40 repeat-like superfamily protein chr5:8459148-8467920 REVERSE LENGTH=1377	4.0e-11	82%
RefSeq	Arabidopsis thaliana	NP_197859.4	transducin/WD40 domain-containing protein [Arabidopsis thaliana]	6.0e-11	82%
RefSeq	Populus trichocarpa	XP_002309040.1	predicted protein [Populus trichocarpa]	1.0e-10	85%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9S5A6

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 112 and 112, Distance to subject end: 1013 aas, your sequence is shorter than subject: 52 - 1330

Fln protein: VVTLAVTHSGSAPELITIGADKTLAIWDTISFKEVKxxKPVAKLTPHSVASW

Protein Length: 53

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCAGGTAGTGCTCCAGAACTGATTACGATTGGTGCAGACAAGACACTTGCCATTTGGGATACTATATCATTCAAGGAAGTCAAAxxxxxxAAGCCAGTTGCAAAGCTCACTCCTCATAGTGTTGCATCTTGG

Fln Alignment:

GG46A6U02IZVHQ___GSAPELITIGADKTLAIWDTISFKEVKRIKPVAKLTPHSVASW
B9S5A6_______________GGAPQLITIGADKTLAIWDTISFKELRRIKPVPKLTCHSVASW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain