SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene73426

Length: 166 nt

UniGene Fasta

>sp_v3.0_unigene73426
CGTCGTGACCTTGGCTGTCACTCAAATTCTGCGAGACATTTCACTCAGAAGATGAGGGTTGGAGAACTTGTAATATCTGTAATAAGCGCATCCATTGTGGATGTATTGCTTCTGCATATTCATTTTACACTAGTTGATACTGGAGGAATTGAATGCATCAATTGTG

Ace file of the UniGene sp_v3.0_unigene73426

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	Isoform 2 of B3 domain-containing transcription repressor VAL2 OS=Arabidopsis thaliana GN=VAL2	-	-	0.0	64%

Source	Gene names
Sma3	PHYPADRAFT_120152;

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	B3 DNA binding domain	IPR003340	-	0.0	-
Sma3	Zinc finger, CW-type	IPR011124	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G32010.1	HSL1, HSI2-L1, VAL2 HSI2-like 1 chr4:15481231-15484897 FORWARD LENGTH=780	2.0e-11	64%
RefSeq	Arabidopsis thaliana	NP_194929.2	B3 domain-containing transcription repressor VAL2 [Arabidopsis thaliana]	2.0e-11	64%
RefSeq	Populus trichocarpa	XP_002325640.1	predicted protein [Populus trichocarpa]	4.0e-13	74%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q5CCK4-2

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 682 aas, your sequence is shorter than subject: 45 - 776

Fln protein: S*PWLSLKFCETFHSEDEGWRTCNICNKRIHCGCIASAYSFYTS*

Protein Length: 46

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTCTGCGAGACATTTCACTCAGAAGATGAGGGTTGGAGAACTTGTAATATCTGTAATAAGCGCATCCATTGTGGATGTATTGCTTCTGCATATTCATTTTACACTAGTTGATACTGGAGGAATTGAATGCATCAATTGTG

Fln Alignment:

GG46A6U02F3JLU___FCETFHSEDEGWRTCNICNKRIHCGCIASAY
Q5CCK4-2_____________FCEVFHAKESGWRECNSCDKRLHCGCIASRF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain