SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene73424

Length: 181 nt

UniGene Fasta

>sp_v3.0_unigene73424
CGTCGTGACCTTGGCTGTCACTCAGTTTGCATATCTGGTCTGTGAAGGATGGAAGCCTTGTCAAGACATATAGAGGAAGTGGTGGAATTTTTGAAGTTTGCTGGAATAGAGAAGGCGATAAAGTTGCAGCTTGTTTTTCAAACAACACAGTCTGTGTATTGGATTTTAGAATGTAACTTCA

Ace file of the UniGene sp_v3.0_unigene73424

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	100%

Source	Gene names
Sma3	At5g67320; CHLREDRAFT_119935; GSVIVT00019608001; MICPUCDRAFT_20651; MICPUN_103376; OSJNBa0016I05.34; OSTLU_26408; Os07g0405100; OsI_25707; OsJ_23913; Ot11g00870; P0613B07.110; PHYPADRAFT_192584; POPTRDRAFT_746796; POPTRDRAFT_860093; RCOM_1154620;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	histone deacetylation	GO:0016575	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	LisH dimerisation motif, subgroup	IPR013720	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G67320.1	HOS15 WD-40 repeat family protein chr5:26857268-26860974 FORWARD LENGTH=613	4.0e-24	71%
RefSeq	Arabidopsis thaliana	NP_201533.1	WD-40 repeat family protein [Arabidopsis thaliana]	5.0e-24	71%
RefSeq	Populus trichocarpa	XP_002306492.1	predicted protein [Populus trichocarpa]	3.0e-24	73%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: A9T8B6

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 58 - 523

Fln protein: S*PWLSLSLHIWSVKDGSLVKTYRGSGGIFEVCWNREGDKVAACFSNNTVCVLDFRM*

Protein Length: 59

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTGCATATCTGGTCTGTGAAGGATGGAAGCCTTGTCAAGACATATAGAGGAAGTGGTGGAATTTTTGAAGTTTGCTGGAATAGAGAAGGCGATAAAGTTGCAGCTTGTTTTTCAAACAACACAGTCTGTGTATTGGATTTTAGAATGTAA___CTTCA

Fln Alignment:

GG46A6U02FJDPK___LHIWSVKDGSLVKTYRGSGGIFEVCWNREGDKVAACFSNNTVCVLDFRM
A9T8B6_______________LHIWSVKDGSLVKTYRGSGGIFEVCWNREGDKVAACFSNNTVCVLDFRM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain