SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene73423

Length: 153 nt

UniGene Fasta

>sp_v3.0_unigene73423
CGTCGTGACCTTGGCTGTCACTCATATTTGCGATAATTGGTAATACAACCTATGTGGCAAGCATTGTTGTAAGGACTTTGGAATGGAGAAAACTAAAGCCAAATTTGCCATGGCTTGTGGATGCTGCAGCCTGTGTGTTTTTAGATTGCTTTA

Ace file of the UniGene sp_v3.0_unigene73423

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cystinosin/ERS1p repeat [Medicago truncatula]	-	-	9.0e-11	65%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	65%
Sma3	Putative uncharacterized protein At2g41050	-	-	9.747e-06	-

Source	Gene names
Sma3	At2g41050; GSVIVT00025009001; MtrDRAFT_AC149134g33v2;

Source	InterPros	Term	Type	e value	Identity
Sma3	Cystinosin/ERS1p repeat	IPR006603	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G36850.1	PQ-loop repeat family protein / transmembrane family protein chr4:17353415-17355822 REVERSE LENGTH=392	7.0e-15	63%
RefSeq	Arabidopsis thaliana	NP_568009.5	PQ-loop repeat family protein / transmembrane family protein [Arabidopsis thaliana]	9.0e-15	63%
RefSeq	Populus trichocarpa	XP_002307928.1	predicted protein [Populus trichocarpa]	1.0e-13	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7SPK1

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 34 aas, your sequence is shorter than subject: 50 - 381

Fln protein: S*PWLSLIFAIIGNTTYVASIVVRTLEWRKLKPNLPWLVDAAACVFLDCF

Protein Length: 51

Fln nts: CGTCGTGACCTTGGCTGTCACTCATATTTGCGATAATTGGTAATACAACCTATGTGGCAAGCATTGTTGTAAGGACTTTGGAATGGAGAAAACTAAAGCCAAATTTGCCATGGCTTGTGGATGCTGCAGCCTGTGTGTTTTTAGATTGCTTTA

Fln Alignment:

GG46A6U02JL5Z5___LSLIFAIIGNTTYVASIVVRTLEWRKLKPNLPWLVDAAACVFLDCF
D7SPK1_______________LMFVFALIANVTYVASILVRTTEWEKIKANMPWLLDAAVCVMLDLF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain