SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene73400

Length: 179 nt

UniGene Fasta

>sp_v3.0_unigene73400
CGTCGTGACCTTGGCTGTCACTCAGGAAGTGCAAACCCTACCATATTGAGTCAAGGCAACCGGTTCTTGGCGCCTGCAGATCCTAGAGCTAAAGAGGTCACGAAGCGGTTAAGCGTGAGTAATCAAGGGATGCTGTGGAATTGGATTTCAAGAGATGATCTGCTACTGAATGGCGCAGT

Ace file of the UniGene sp_v3.0_unigene73400

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pectate lyase n=2 Tax=Carica papaya RepID=Q0Q2I1_CARPA	-	-	6.0e-11	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Sma3	Pectate lyase	-	-	9.169e-18	-

Source	ECs	Term	Type	e value	Identity
Sma3	Pectate lyase.	EC:4.2.2.2	-	8.48304e-41	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Pentose and glucuronate interconversions	00040		8.48304e-41	%

Source	Gene names
Sma3	At1g04680; At3g07010; At3g24230; At3g24670; At4g13210; At4g13710; At4g24780; At5g48900; At5g63180; F17N18.100; F18A5.100; F22K18.20; GSVIVT00001248001; GSVIVT00015920001; GSVIVT00020459001; GSVIVT00030705001; K19E20.1; MDC12_15; MSD24.10; MSD24_7; MUJ8.14

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	lyase activity	GO:0016829	Molecular Function	-
Sma3	pectate lyase activity	GO:0030570	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Pectate lyase/Amb allergen	IPR002022	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Pectate lyase, N-terminal	IPR007524	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	AmbAllergen	IPR018082	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G24670.1	Pectin lyase-like superfamily protein chr3:9006205-9008801 REVERSE LENGTH=440	4.0e-15	67%
RefSeq	Arabidopsis thaliana	NP_189110.1	pectate lyase [Arabidopsis thaliana]	6.0e-15	67%
RefSeq	Populus trichocarpa	XP_002330086.1	predicted protein [Populus trichocarpa]	7.0e-14	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ36

Fln msg: Distance to subject end: 44 aas, your sequence is shorter than subject: 59 - 426

Fln protein: RRDLGCHSGSANPTILSQGNRFLAPADPRAKEVTKRLSVSNQGMLWNWISRDDLLLNGA

Protein Length: 60

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGAAGTGCAAACCCTACCATATTGAGTCAAGGCAACCGGTTCTTGGCGCCTGCAGATCCTAGAGCTAAAGAGGTCACGAAGCGGTTAAGCGTGAGTAATCAAGGGATGCTGTGGAATTGGATTTCAAGAGATGATCTGCTACTGAATGGCGCAGT

Fln Alignment:

GG46A6U02IQGEN___GSANPTILSQGNRFLAPADPRAKEVTKRLSVS-NQGMLWNWISRDDLLLNGA
B8LQ36_______________GSANPTINSQGNRFLAPANPLAKEVTKRINQDVGEWKEWNWRSNGDMMLNGA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain