SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene73398

Length: 234 nt

UniGene Fasta

>sp_v3.0_unigene73398
CGTCGTGACCTTGGCTGTCACTCATCTTCAGATGTATGTGGAAGATGTTGAGGTCGGAAATTCAGCAAGAGGCGGGCCAACAAATGGGATGAACAGGAGTCTTCAGCAGACGGTAGATTGCAATACATCATGTGCGCGAAGATGCAAGGAAGCATTCCGCCATAATGTATGTTTTGTAGGTTGCGGTACATGCTGTGCCAAATGCACCTGTGTTCCTCCGGGGATATCGGGCGT

Ace file of the UniGene sp_v3.0_unigene73398

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative gibberellin-regulated protein [Arabidopsis thaliana] ref\|NP_001185065.1\| putative gibberellin-regulated protein [Arabidopsis thaliana] ref\|NP_001185066.1\| putative gibberellin-regulated protein [Arabidopsis thaliana] dbj\|BAC43377.1\| putative gibb	-	-	1.0e-08	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%

Source	InterPros	Term	Type	e value	Identity
Sma3	Gibberellin regulated protein	IPR003854	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G22690.1	Gibberellin-regulated family protein chr1:8027328-8027961 FORWARD LENGTH=119	2.0e-13	57%
RefSeq	Arabidopsis thaliana	NP_001185066.1	putative gibberellin-regulated protein [Arabidopsis thaliana]	2.0e-13	57%
RefSeq	Populus trichocarpa	XP_002321566.1	predicted protein [Populus trichocarpa]	8.0e-15	55%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NKH2

Fln msg: Distance to subject end: 20 aas, atg_distance in limit (1-15): atg_distance = 11, your sequence is shorter than subject: 67 - 109

Fln protein: MYVEDVEVGNSARGGPTNGMNRSLQQTVDCNTSCARRCKEAFRHNVCFVGCGTCCAKCTCVPPGISG

Protein Length: 68

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTTCAG_-_ATGTATGTGGAAGATGTTGAGGTCGGAAATTCAGCAAGAGGCGGGCCAACAAATGGGATGAACAGGAGTCTTCAGCAGACGGTAGATTGCAATACATCATGTGCGCGAAGATGCAAGGAAGCATTCCGCCATAATGTATGTTTTGTAGGTTGCGGTACATGCTGTGCCAAATGCACCTGTGTTCCTCCGGGGATATCGGGCGT

Fln Alignment:

GG46A6U02G0J8M___LQMYVEDVEVGNSARGG-PTNGMNRSLQQTVDCNTSCARRCKEAFRHNVCFVGCGTCCAKCTCVPPGISG
A9NKH2_______________VQMYLEAADVGASTAAGLQTNGMNRSLLQTIDCNAACGQRCKEASRHKVCLRACGTCCAKCNCVPPGTSG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain