SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene73311

Length: 223 nt

UniGene Fasta

>sp_v3.0_unigene73311
CGTCGTGACCTTGGCTGTCACTCAATCTTCGGATGGTGCGCGAGGTGGAAGCCATCGGAGGGAATGTTACGGCATCGGCATCCCGAGAACAGATGGGGTACACTTTCGATGCTCTCAAAACCTATCTCCCCGAGATGGTAGAATTGCTGATTGATAGTGTGAGGAACGCAGTTTTTCTGACTGGGAGTTAACGACAGCTAGTGAAAGTGAAATCAGAGATTGA

Ace file of the UniGene sp_v3.0_unigene73311

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative mitochondrial processing peptidase alpha subunit [Oryza sativa Japonica Group] dbj\|BAG89683.1\| unnamed protein product [Oryza sativa Japonica Group]	-	-	3.0e-17	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Sma3	Mitochondrial processing peptidase alpha subunit, putative	-	-	1.55e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Mitochondrial processing peptidase.	EC:3.4.24.64	-	3.737e-17	-

Source	Gene names
Sma3	At1g51980; At3g16480; F5F19.4; GSVIVT00016635001; GSVIVT00034277001; MDC8.11; MICPUN_91773; MPP; OSJNBa0075A10.17; Os01g0191500; Os01g0739000; Os05g0524300; OsI_00727; OsI_03671; OsJ_00704; OsJ_03392; OsJ_19261; P0638D12.13; P0710E05.34; PHYPADRAFT_114884

Source	GOs	Term	Type	Identity
Sma3	mitochondrial outer membrane	GO:0005741	Cellular Component	-
Sma3	mitochondrial inner membrane	GO:0005743	Cellular Component	-
Sma3	mitochondrial respiratory chain complex III	GO:0005750	Cellular Component	-
Sma3	mitochondrial intermembrane space	GO:0005758	Cellular Component	-
Sma3	mitochondrial matrix	GO:0005759	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	metalloendopeptidase activity	GO:0004222	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ubiquinol-cytochrome-c reductase activity	GO:0008121	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	electron transport chain	GO:0022900	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M16, zinc-binding site	IPR001431	-	-
Sma3	Peptidase M16, C-terminal	IPR007863	-	-
Sma3	Peptidase M16, core	IPR011237	-	-
Sma3	Peptidase M16, N-terminal	IPR011765	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G16480.1	MPPalpha mitochondrial processing peptidase alpha subunit chr3:5599906-5602716 FORWARD LENGTH=499	9.0e-22	70%
RefSeq	Arabidopsis thaliana	NP_566548.1	mitochondrial processing peptidase [Arabidopsis thaliana]	1.0e-21	70%
RefSeq	Populus trichocarpa	XP_002311862.1	predicted protein [Populus trichocarpa]	2.0e-23	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ACF4

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 304 aas, your sequence is shorter than subject: 63 - 510

Fln protein: S*PWLSLNLRMVREVEAIGGNVTASASREQMGYTFDALKTYLPEMVELLIDSVRNAVFLTGS*

Protein Length: 64

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTTCGGATGGTGCGCGAGGTGGAAGCCATCGGAGGGAATGTTACGGCATCGGCATCCCGAGAACAGATGGGGTACACTTTCGATGCTCTCAAAACCTATCTCCCCGAGATGGTAGAATTGCTGATTGATAGTGTGAGGAACGCAGTTTTTCTGACTGGGAGTTAACGACAGCTAGTGAAAGTGAAATCAGAGATTGA

Fln Alignment:

GG46A6U02FSJ79___NLRMVREVEAIGGNVTASASREQMGYTFDALKTYLPEMVELLIDSVRNAVFLTGS*R-QLVKVKSEI
D5ACF4_______________HLRMVREVEAIGGNVTASASREQMGYTFDALKTYLPEMVELLVDSVRNPVFLDWEVKEQLAKVKSEI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain