SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene73273

Length: 126 nt

UniGene Fasta

>sp_v3.0_unigene73273
CGTCGTGACCTTGGCTGTCACTCAATTCCATTCAACACAGTATATTCGTCACACTAGCAATCCAATGTACACTCCTGAACCTGACATTTGCCATGAGATACTTGGTCACGTGCCAATGCTTGTACA

Ace file of the UniGene sp_v3.0_unigene73273

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chloroplast phenylalanine hydroxylase n=1 Tax=Pinus taeda RepID=E5KBU3_PINTA	-	-	3.0e-13	89%
FL-Next	tr=Chloroplast phenylalanine hydroxylase; Pinus taeda (Loblolly pine).	-	-	0.0	89%

Source	Gene names
Sma3	PAH1; PHATRDRAFT_13175; PHYPADRAFT_5250; THAPSDRAFT_bd415;

Source	GOs	Term	Type	Identity
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	aromatic amino acid family metabolic process	GO:0009072	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Aromatic amino acid hydroxylase	IPR001273	-	-
Sma3	Aromatic amino acid hydroxylase, iron/copper binding site	IPR018301	-	-
Sma3	Prephenate dehydratase, conserved site	IPR018528	-	-
Sma3	Aromatic amino acid hydroxylase, C-terminal	IPR019774	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: E5KBU3

Fln msg: Distance to subject end: 114 aas, your sequence is shorter than subject: 41 - 354

Fln protein: VVTLAVTQFHSTQYIRHTSNPMYTPEPDICHEILGHVPMLV

Protein Length: 42

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCCATTCAACACAGTATATTCGTCACACTAGCAATCCAATGTACACTCCTGAACCTGACATTTGCCATGAGATACTTGGTCACGTGCCAATGCTTGTACA

Fln Alignment:

GG46A6U02GYF9L___LAVTQFHSTQYIRHTSNPMYTPEPDICHEILGHVPMLV
E5KBU3_______________LAFKTFHSTQYIRHTSNPMYTPEPDICHEILGHMPMLV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain