SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene73221

Length: 222 nt

UniGene Fasta

>sp_v3.0_unigene73221
CGTCGTGACCTTGGCTGTCACTCAATCTCTATTGCTTTGGTATGTTTGCAGAGTTTGCTGCCTTTATATGGTTAAGAATCAAGAAGCCAGGACTTGCTCGCCCCTATAAAGTTCCTCTTGGGACTGTTGGAGTTATTCTCCTCTGTCTAATACCTTCGTTGTTACTGGTTCTGGTGGTAGCAGTCGCTTCTTTTAAAGTGATGGCTGCCAGTATCAGTGCAG

Ace file of the UniGene sp_v3.0_unigene73221

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative amino acid permease [Oryza sativa Japonica Group] gb\|ABF97258.1\| amino acid permease family protein, putative, expressed [Oryza sativa Japonica Group]	-	-	7.0e-08	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Sma3	Neutral amino acid transport protein	-	-	4.267e-08	-

Source	Gene names
Sma3	At3g19553; GSVIVT00001446001; GSVIVT00003185001; GSVIVT00003187001; LOC_Os03g37984; Os03g0576900; OsI_12346; OsJ_11523; POPTRDRAFT_202043; POPTRDRAFT_280035; POPTRDRAFT_556671; POPTRDRAFT_642081; PTRLAT6; PtrLAT3; PtrLAT5; PtrLAT7; RCOM_0174790; RCOM_1596

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	amino acid transmembrane transporter activity	GO:0015171	Molecular Function	-
Sma3	amino acid transport	GO:0006865	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Amino acid/polyamine transporter I	IPR002293	-	0.0	-
Sma3	Amino acid permease domain	IPR004841	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPK8

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 70 aas, your sequence is shorter than subject: 73 - 502

Fln protein: S*PWLSLNLYCFGMFAEFAAFIWLRIKKPGLARPYKVPLGTVGVILLCLIPSLLLVLVVAVASFKVMAASISA

Protein Length: 74

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTCTATTGCTTTGGTATGTTTGCAGAGTTTGCTGCCTTTATATGGTTAAGAATCAAGAAGCCAGGACTTGCTCGCCCCTATAAAGTTCCTCTTGGGACTGTTGGAGTTATTCTCCTCTGTCTAATACCTTCGTTGTTACTGGTTCTGGTGGTAGCAGTCGCTTCTTTTAAAGTGATGGCTGCCAGTATCAGTGCAG

Fln Alignment:

GG46A6U02JLOIR___LYCFGMFAEFAAFIWLRIKKPGLARPYKVPLGT
B8LPK8_______________LYCIGMLLEFAAFVWLRIKHPDLQRPYKVPLNT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain