SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene73196

Length: 197 nt

UniGene Fasta

>sp_v3.0_unigene73196
CGTCGTGACCTTGGCTGTCACTCATTGTATAACAACGGTCCCAACCCAAACATTCTTGTCGGTGCTGTAGTTGGAGGACCCGACAACAATGACCGCTTTTCCGACGACCGCAATGACTATGCGCACTCTGAACCCCACCACTTATATCAATGCTCCATTCGTCGGTTGCCTCGCCTATTTGGCACAGTTCGGATCTT

Ace file of the UniGene sp_v3.0_unigene73196

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Endo-beta-1,4-glucanase n=1 Tax=Pinus radiata RepID=O64402_PINRA	-	-	4.0e-09	58%
FL-Next	tr=Endo-beta-1,4-glucanase; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	0.0	82%
Sma3	Endoglucanase 1	-	-	7.374e-09	-

Source	Gene names
Sma3	CEL1; PrCel1; PrCel2;

Source	GOs	Term	Type	Identity
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	cellulase activity	GO:0008810	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	fruit ripening	GO:0009835	Biological Process	-
Sma3	cellulose catabolic process	GO:0030245	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 9	IPR001701	-	-
Sma3	Six-hairpin glycosidase	IPR012341	-	-
Sma3	Glycoside hydrolase, family 9, active site	IPR018221	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: O64402

Fln msg: Overlapping hits, possible frame ERROR between 135 and 134, STOP codon was not found. Distance to subject end: 0 aas, your sequence is shorter than subject: 66 - 515

Fln protein: RRDLGCHSLYNNGPNPNILVGAVVGGPDNNDRFSDDRNDYAHSExxTTYINAPFVGCLAYLAQFGS

Protein Length: 67

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGTATAACAACGGTCCCAACCCAAACATTCTTGTCGGTGCTGTAGTTGGAGGACCCGACAACAATGACCGCTTTTCCGACGACCGCAATGACTATGCGCACTCTGAAxxxxxxACCACTTATATCAATGCTCCATTCGTCGGTTGCCTCGCCTATTTGGCACAGTTCGGATCTT

Fln Alignment:

GG46A6U02GD397___GCHSLYNNGPNPNILVGAVVGGPXXXXXXXXXXXXYAHSExTTYINAPFVGCLAYLA
O64402_______________GFQSLYSNAPNPNRLVGAVVGGPDNNDHFSDERNDYAHSExTTYINAPLVGSLAYLA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain