SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene73177

Length: 210 nt

UniGene Fasta

>sp_v3.0_unigene73177
CGTCGTGACCTTGGCTGTCACTCAGTTATTAACTCTGAATCCTTATCATTCAGACCGATTTCTTCTGTCACACTCTGCATTGGCTGGGATTGTAACTTTGCTTCATGCATGTTTGGACATGAAGAATATTATTTTGGGAAAATACCATTATGTACTCTACTTCCTTGTGTTGGCTATGCAGCCAAGGATGTTAATGACAGTGGACGAGAA

Ace file of the UniGene sp_v3.0_unigene73177

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative 26S proteasome regulatory subunit S2 [Arabidopsis thaliana]	-	-	2.0e-21	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	Putative 26S proteasome regulatory subunit S2	-	-	1.691e-12	-

Source	Gene names
Sma3	AT4g28470; At2g20580; At4g28470; CHLREDRAFT_137945; F20O9.150; GSVIVT00018639001; MICPUCDRAFT_32266; MICPUN_90309; OJ1008_C03.11; OSTLU_33401; Os02g0146700; Os06g0699900; Os09g0326800; OsI_05840; OsI_24349; OsI_30901; OsJ_05368; OsJ_22525; OsJ_28885; OsRP

Source	GOs	Term	Type	Identity
Sma3	proteasome complex	GO:0000502	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	proteasome regulatory particle, base subcomplex	GO:0008540	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	DNA-dependent ATPase activity	GO:0008094	Molecular Function	-
Sma3	enzyme regulator activity	GO:0030234	Molecular Function	-
Sma3	DNA metabolic process	GO:0006259	Biological Process	-
Sma3	regulation of protein catabolic process	GO:0042176	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR001553	-	-
Sma3	Proteasome/cyclosome, regulatory subunit	IPR002015	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	26S proteasome regulatory complex, non-ATPase subcomplex, Rpn1 subunit	IPR016643	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G20580.1	RPN1A, ATRPN1A 26S proteasome regulatory subunit S2 1A chr2:8859211-8864699 FORWARD LENGTH=891	5.0e-27	85%
RefSeq	Arabidopsis thaliana	NP_565477.1	26S proteasome regulatory subunit N1 [Arabidopsis thaliana]	7.0e-27	85%
RefSeq	Populus trichocarpa	XP_002327906.1	predicted protein [Populus trichocarpa]	3.0e-28	87%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRR7

Fln msg: Distance to subject end: 77 aas, your sequence is shorter than subject: 69 - 892

Fln protein: VVTLAVTQLLTLNPYHSDRFLLSHSALAGIVTLLHACLDMKNIILGKYHYVLYFLVLAMQPRMLMTVDE

Protein Length: 70

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTATTAACTCTGAATCCTTATCATTCAGACCGATTTCTTCTGTCACACTCTGCATTGGCTGGGATTGTAACTTTGCTTCATGCATGTTTGGACATGAAGAATATTATTTTGGGAAAATACCATTATGTACTCTACTTCCTTGTGTTGGCTATGCAGCCAAGGATGTTAATGACAGTGGACGAGAA

Fln Alignment:

GG46A6U02F8QRN___NPYHSDRFLLSHSALAGIVTLLHACLDMKNIILGKYHYVLYFLVLAMQPRMLMTVDE
B8LRR7_______________NPYHSDRFLLSHSALAGIITLLHSCLDMKSIILGKYHYVLYFLVLAMQPRMLLTVDE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain