SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene73134

Length: 335 nt

UniGene Fasta

>sp_v3.0_unigene73134
CGTCGTGACCTTGGCTGTCACTCAAATGGGGGGGCGAATTCCATGGAAGAAAGAAGAACACCCAGTGGAAGTAATTGGACGCATGAGGCATGCTCATCAGAATGGCGGAATAGGAATTCAAGTAACAGAGAAAGGCGTGAGACTCAGAGCAGACTCGGGATATTGCAGGGACTTTAGTCTCGATGGCATATCTTGGAGTGGAGAGGCCCTGCTGCTGTTTTACCTAAGTACATTGAAGGGCGGGTGGAAGGAGTGAAGAGCGGGGGCAAATGCACTATCATAATGTATGGAGCAACAGGGTCTGGTAAGAGTTATACCATGTTTGGTACTTCCAA

Ace file of the UniGene sp_v3.0_unigene73134

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative phragmoplast-associated kinesin n=3 Tax=Oryza sativa RepID=Q6K990_ORYSJ	-	-	2.0e-15	58%
FL-Next	tr=Uncharacterized protein; Brachypodium distachyon (Purple false brome) (Trachynia distachya).	-	-	0.0	49%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G14330.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein chr4:8244228-8247286 FORWARD LENGTH=869	2.0e-16	59%
RefSeq	Arabidopsis thaliana	NP_567426.1	phragmoplast-associated kinesin-related protein 2 [Arabidopsis thaliana]	2.0e-16	59%
RefSeq	Populus trichocarpa	XP_002312587.1	predicted protein, partial [Populus trichocarpa]	9.0e-17	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: I1IDR0

Fln msg: Separated hits, possible frame ERROR between 205 and 226, Distance to subject end: 766 aas, your sequence is shorter than subject: 111 - 915

Fln protein: VVTLAVTQMGGRIPWKKEEHPVEVIGRMRHAHQNGGIGIQVTEKGVRLRADSGYCRDFSLDGISWSGxxxxxxxxKYIEGRVEGVKSGGKCTIIMYGATGSGKSYTMFGTS

Protein Length: 112

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATGGGGGGGCGAATTCCATGGAAGAAAGAAGAACACCCAGTGGAAGTAATTGGACGCATGAGGCATGCTCATCAGAATGGCGGAATAGGAATTCAAGTAACAGAGAAAGGCGTGAGACTCAGAGCAGACTCGGGATATTGCAGGGACTTTAGTCTCGATGGCATATCTTGGAGTGGAGAxxxxxxxxxxxxxxxxxxxxxTAAGTACATTGAAGGGCGGGTGGAAGGAGTGAAGAGCGGGGGCAAATGCACTATCATAATGTATGGAGCAACAGGGTCTGGTAAGAGTTATACCATGTTTGGTACTTCCAA

Fln Alignment:

GG46A6U02IO7LP___GGRIPWKKEEHPVEVIGRMRH--AHQNGGIGIQVTEKG--VRLRADSGYCRDFSLDGISWSGExxxxxxxKYIEGRVEGVKSGGKCTIIMYGATGSGKSYTMFG
I1IDR0_______________GGGAAGAATEHPVEVIGRVRNLTAAAAGASALEVAGGGTAVRVRGDAGGCRDFTLDGVSVSEExxxxxxxRFVRSRIEGVRVGAKCTVMVYGPTGSGKSHTMFG

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain