SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene73125

Length: 195 nt

UniGene Fasta

>sp_v3.0_unigene73125
CGTCGTGACCTTGGCTGTCACTCAAACATTTTGCTTTGCATTTGCGCCGATCAGCTATGGTGTGTCCATCATTGGGAATATTCAGCAGCAGGGCATTCGGGTTTCCTTCGATTCCGCCAACTCTCTCATTGGTTTCGGTTTCGGCCAGTGCTGATTAACATTTATTGCTTCCTTTACAATAAAATATTAGTGCTG

Ace file of the UniGene sp_v3.0_unigene73125

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Aspartic proteinase nepenthesin-1, putative n=1 Tax=Ricinus communis RepID=B9ST28_RICCO	-	-	5.0e-09	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%

Source	Gene names
Sma3	RCOM_0353740;

Source	GOs	Term	Type	e value	Identity
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	0.0	-
Sma3	proteolysis	GO:0006508	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase A1	IPR001461	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Proteinase inhibitor I2, Kunitz metazoa	IPR002223	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G25510.1	Eukaryotic aspartyl protease family protein chr1:8959372-8960823 REVERSE LENGTH=483	3.0e-12	64%
RefSeq	Arabidopsis thaliana	NP_173922.1	aspartyl protease-like protein [Arabidopsis thaliana]	4.0e-12	64%
RefSeq	Populus trichocarpa	XP_002306246.1	predicted protein, partial [Populus trichocarpa]	5.0e-12	61%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LP16

Fln msg: your sequence is shorter than subject: 51 - 350

Fln protein: VVTLAVTQTFCFAFAPISYGVSIIGNIQQQGIRVSFDSANSLIGFGFGQC*

Protein Length: 52

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAACATTTTGCTTTGCATTTGCGCCGATCAGCTATGGTGTGTCCATCATTGGGAATATTCAGCAGCAGGGCATTCGGGTTTCCTTCGATTCCGCCAACTCTCTCATTGGTTTCGGTTTCGGCCAGTGCTGA___TTAACATTTATTGCTTCCTTTACAATAAAATATTAGTGCTG

Fln Alignment:

GG46A6U02IERR3___TFCFAFAPISYGVSIIGNIQQQGIRVSFDSANSLIGFGFGQC
B8LP16_______________TFCFAFAPADSNLSIMGNIQQQGIRVSFDSANSLVGFAIDQC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain